BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946420
Length=929
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17920.1 | Symbols: | RING/U-box superfamily protein | chr4... 1371 0.0
> AT4G17920.1 | Symbols: | RING/U-box superfamily protein | chr4:9963221-9964090
REVERSE LENGTH=870
Length=870
Score = 1371 bits (742), Expect = 0.0
Identities = 814/850 (96%), Gaps = 0/850 (0%)
Strand=Plus/Plus
Query 56 ACCTCCGCCACCGCAACCTCCGCCACAACATTACGTTACACCGCCTCTCACGGTGATCCT 115
||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 21 ACCTCTGGCACCGCAACCTCCGCAACAACATTACGTTACACCGCCTCTCACGGTGATCCT 80
Query 116 CACCGTAATCCTCCTCGTCTTCTTCTTCATTGGTTTCTTCACTCTCTATTTTTGCAAGTG 175
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 81 CACCGTAATCCTCCTCGTTTTCTTCTTCATCGGTTTCTTCACTCTCTATTTTTGCAAGTG 140
Query 176 TTTCCTCGACACAATGATGCAAGCTTGGCGTCTCCACCACGGCGGAGATACCGTATCCGA 235
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 141 TTTCCTCGACACAATGGTGCAAGCTTGGCGTCTCCACCACGGCGGAGACACCGTATCCGA 200
Query 236 CAATCCCCTCCAGCCACCGGAAGCTCCACCCGTAAATCCCGGTCTTGACCTCCGGATCAT 295
|||||||||||||| ||||||||||||||| ||||||||||| ||||| || || |||||
Sbjct 201 CAATCCCCTCCAGCAACCGGAAGCTCCACCGGTAAATCCCGGCCTTGAACTTCGAATCAT 260
Query 296 TAATTCGTTTCCCACTTTTCCTTACTCCTCCGTTAAAGATCTCCGGGAAGAAAAATACGG 355
||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 261 TAACTCATTTCCCACTTTTCCTTACTCCTCCGTTAAAGATCTCCGGGAAGAGAAATACGG 320
Query 356 CCTCGAATGCGCCATTTGTCTTCTCGAATTCGACGGAGATCACGTGCTCCGTCTCTTGAC 415
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 321 CCTCGAATGCGCCATTTGTCTTCTCGAATTCGACGGAGATCACGTGCTACGTCTCTTGAC 380
Query 416 AACATGCTACCACGTGTTCCACCAAGAATGCATCGATCTCTGGTTCGAATCTCACAGAAC 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 AACATGCTACCACGTGTTCCACCAAGAATGCATCGATCTCTGGTTCGAATCTCACAGAAC 440
Query 476 TTGTCCTGTTTGTCGTCGAGATCTTGATCCTCCTCCGCAACCGGAAAACACCAAGCCTAC 535
||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 441 TTGCCCTGTTTGTCGTCGGGATCTTGATCCTCCTCCGCCACCGGAAAACACCAAGCCTAC 500
Query 536 CGTCGATGAAATGATCATAGATGTGATTCAAGAAACAAGCGACGACGAGGAAGACGATCA 595
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 501 TGTCGATGAGATGATCATAGATGTGATTCAAGAAACAAGCGACGACGAAGAAGACGATCA 560
Query 596 TCATCGTCATCAGACAACAACACCTATTGATACTTGGCCATCTTCAGGACAGAGTAGTAG 655
||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 561 TCATCGTCAGCAGACAACAACACAGATTGATACTTGGCCATCTTCAGGACAGACCAGTAG 620
Query 656 CATCAAAAAGGAACAAAACTTGCCGGAGAAATTCTCTAGATCGCACTCGACGGGACACTC 715
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 621 CATCAAAAAGGAACAAAACTTGCCGGAGAAATTCTCTAGATCGCATTCTACGGGACACTC 680
Query 716 GATAGTGAGAAACAAACCGGAGGAAGAAGATAAGTATACATTGAGATTACCAGAACATGT 775
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 GATAGTGAGAAATAAACCGGAGGAAGAAGATAAGTATACATTGAGATTACCAGAACATGT 740
Query 776 AAAGATTAAGGTCACGAGAGGACATAGTCAGACAGAGAGTTGTGTTACGTTCGCCGAACT 835
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 741 AAAGATTAAGGTCACGAGAGGACATAGCCAGACAGAGAGTTGTGTTACGTTCGCTGAACT 800
Query 836 TGTTAAAAACAGAGGATATGATCATCGCCGGTTTGGTGAAGTCTCTGGTCAAACGCAATC 895
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 TATTAGAAACAGAGGATATGATCATCGCCGGTTTGGTGAAGTCTCTGGTCAAACGCAATC 860
Query 896 TGAAAATTGA 905
| ||||||||
Sbjct 861 TAAAAATTGA 870
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45411668888
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5