BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg946420 Length=929 Score E Sequences producing significant alignments: (Bits) Value AT4G17920.1 | Symbols: | RING/U-box superfamily protein | chr4... 1371 0.0 > AT4G17920.1 | Symbols: | RING/U-box superfamily protein | chr4:9963221-9964090 REVERSE LENGTH=870 Length=870 Score = 1371 bits (742), Expect = 0.0 Identities = 814/850 (96%), Gaps = 0/850 (0%) Strand=Plus/Plus Query 56 ACCTCCGCCACCGCAACCTCCGCCACAACATTACGTTACACCGCCTCTCACGGTGATCCT 115 ||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 21 ACCTCTGGCACCGCAACCTCCGCAACAACATTACGTTACACCGCCTCTCACGGTGATCCT 80 Query 116 CACCGTAATCCTCCTCGTCTTCTTCTTCATTGGTTTCTTCACTCTCTATTTTTGCAAGTG 175 |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 81 CACCGTAATCCTCCTCGTTTTCTTCTTCATCGGTTTCTTCACTCTCTATTTTTGCAAGTG 140 Query 176 TTTCCTCGACACAATGATGCAAGCTTGGCGTCTCCACCACGGCGGAGATACCGTATCCGA 235 |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| Sbjct 141 TTTCCTCGACACAATGGTGCAAGCTTGGCGTCTCCACCACGGCGGAGACACCGTATCCGA 200 Query 236 CAATCCCCTCCAGCCACCGGAAGCTCCACCCGTAAATCCCGGTCTTGACCTCCGGATCAT 295 |||||||||||||| ||||||||||||||| ||||||||||| ||||| || || ||||| Sbjct 201 CAATCCCCTCCAGCAACCGGAAGCTCCACCGGTAAATCCCGGCCTTGAACTTCGAATCAT 260 Query 296 TAATTCGTTTCCCACTTTTCCTTACTCCTCCGTTAAAGATCTCCGGGAAGAAAAATACGG 355 ||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 261 TAACTCATTTCCCACTTTTCCTTACTCCTCCGTTAAAGATCTCCGGGAAGAGAAATACGG 320 Query 356 CCTCGAATGCGCCATTTGTCTTCTCGAATTCGACGGAGATCACGTGCTCCGTCTCTTGAC 415 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 321 CCTCGAATGCGCCATTTGTCTTCTCGAATTCGACGGAGATCACGTGCTACGTCTCTTGAC 380 Query 416 AACATGCTACCACGTGTTCCACCAAGAATGCATCGATCTCTGGTTCGAATCTCACAGAAC 475 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 381 AACATGCTACCACGTGTTCCACCAAGAATGCATCGATCTCTGGTTCGAATCTCACAGAAC 440 Query 476 TTGTCCTGTTTGTCGTCGAGATCTTGATCCTCCTCCGCAACCGGAAAACACCAAGCCTAC 535 ||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| Sbjct 441 TTGCCCTGTTTGTCGTCGGGATCTTGATCCTCCTCCGCCACCGGAAAACACCAAGCCTAC 500 Query 536 CGTCGATGAAATGATCATAGATGTGATTCAAGAAACAAGCGACGACGAGGAAGACGATCA 595 |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 501 TGTCGATGAGATGATCATAGATGTGATTCAAGAAACAAGCGACGACGAAGAAGACGATCA 560 Query 596 TCATCGTCATCAGACAACAACACCTATTGATACTTGGCCATCTTCAGGACAGAGTAGTAG 655 ||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||| Sbjct 561 TCATCGTCAGCAGACAACAACACAGATTGATACTTGGCCATCTTCAGGACAGACCAGTAG 620 Query 656 CATCAAAAAGGAACAAAACTTGCCGGAGAAATTCTCTAGATCGCACTCGACGGGACACTC 715 ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 621 CATCAAAAAGGAACAAAACTTGCCGGAGAAATTCTCTAGATCGCATTCTACGGGACACTC 680 Query 716 GATAGTGAGAAACAAACCGGAGGAAGAAGATAAGTATACATTGAGATTACCAGAACATGT 775 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 681 GATAGTGAGAAATAAACCGGAGGAAGAAGATAAGTATACATTGAGATTACCAGAACATGT 740 Query 776 AAAGATTAAGGTCACGAGAGGACATAGTCAGACAGAGAGTTGTGTTACGTTCGCCGAACT 835 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 741 AAAGATTAAGGTCACGAGAGGACATAGCCAGACAGAGAGTTGTGTTACGTTCGCTGAACT 800 Query 836 TGTTAAAAACAGAGGATATGATCATCGCCGGTTTGGTGAAGTCTCTGGTCAAACGCAATC 895 | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 801 TATTAGAAACAGAGGATATGATCATCGCCGGTTTGGTGAAGTCTCTGGTCAAACGCAATC 860 Query 896 TGAAAATTGA 905 | |||||||| Sbjct 861 TAAAAATTGA 870 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45411668888 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5