BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946421
Length=1434
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17915.1 | Symbols: | pseudogene of pentatricopeptide (PPR)... 2218 0.0
> AT4G17915.1 | Symbols: | pseudogene of pentatricopeptide (PPR)
repeat-containing/C3HC4-type RING finger containing protein
| chr4:9959013-9960404 REVERSE LENGTH=1392
Length=1392
Score = 2218 bits (1201), Expect = 0.0
Identities = 1327/1390 (95%), Gaps = 0/1390 (0%)
Strand=Plus/Plus
Query 21 ATGGTTCGTGGGTTGGTGAATTTCACTGGATTATCAACGAGGTTATTAAACATTTGCGTT 80
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTTCGTGGGTTGGTGAATTTCACCGGATTATCAACGAGGTTATTAAACATTTGCGTT 60
Query 81 GATTCACTCTGCAAATTTCGGAAATTGGAAAAAGCTGAGACCTTGATCATTGACGGAATC 140
||||||||||||||||| |||||||| || ||||||||| | || |||||||||||||||
Sbjct 61 GATTCACTCTGCAAATTCCGGAAATTAGAGAAAGCTGAGTCTTTAATCATTGACGGAATC 120
Query 141 AGATTAGGTGTTGCTCCTGATGTCGTCACTTACAACACATTGATCAGTGGTTATTGTCGA 200
||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 121 AGATTAGGTGTTGATCCTGATGTCGTCACTTACAACACACTGATCAGTGGCTATTGTCGA 180
Query 201 TTCGTTGGTATAGAAGAAGGTTACGCTGTGACTCTTCGGATGAGAGACGCCGGAATTAGA 260
||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||
Sbjct 181 TTCGTTGGTATAGAAGAAGCTTACGCTGTGACTCGTCGTATGAGAGACGCCGGAATTAGA 240
Query 261 CCAGACGTCGCTACGTATAATTCTTTAATCGCCGGAGCAGCTAGACGGCTGATGTTAGAT 320
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 CCAGACGTAGCTACGTATAATTCTTTAATCGCCGGAGCAGCTAGACGGCTTATGTTAGAT 300
Query 321 CGTGTCCTCTACCTGTTCGACGAAATGCTTGAGTGGGGTATTTATCCTGATTTGTGGAGT 380
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 301 CATGTCCTCTACCTGTTCGACGAAATGCTTGAGTGGGGAATTTATCCTGATTTGTGGAGT 360
Query 381 TACAATACTTTGATGTGTTGTTATTTTAAGCTAGGGAAACACGAAGAAGCGTTTCGGGTT 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TACAATACTTTGATGTGTTGTTATTTTAAGCTAGGGAAACACGAAGAAGCGTTTCGGGTT 420
Query 441 CTTTATAAGGATCTTCAGCTCGCCGGGCTAAGTCCCGGTCCTGATACTTACAATGTTCTT 500
||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||
Sbjct 421 CTTTATAAGGATCTTCAGCTCGCTGGGCTAAATCCAGGTCCTGATACTTACAATGTTCTT 480
Query 501 CTTGATGCTCTATGCAAGTGTGGGTATATAGACAATGCTCTTGAGCTCTTTAAAGAGATG 560
||||||||| ||||||||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 481 CTTGATGCTTTATGCAAGTGTGGTTATATAGACAATGCTCTAGAGCTTTTTAAAGAGATG 540
Query 561 CAGAGTAAGTTTAAACCGGAGCTTATGACTTATAACATTCTTATCAACGGGCTTTGTAAA 620
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CAGAGTAGGTTTAAACCGGAGCTTATGACTTATAACATTCTTATCAACGGGCTTTGTAAA 600
Query 621 TCCAGGAGGGTCGGTACTGCGAAATGGATGCTGACTGAGCTCAAGAGATCGGGTTACACT 680
|||||||| ||||||||||||||||||||||| || ||||| |||| ||| |||||||||
Sbjct 601 TCCAGGAGAGTCGGTACTGCGAAATGGATGCTAACGGAGCTGAAGAAATCAGGTTACACT 660
Query 681 CCGAATGCTGTTACATACACTACAATCCTGAAATTATATATTAAGACTAGGAGGATTCGA 740
||||||||||||||||| |||||||||||||| ||||| ||||||| ||||||||| ||
Sbjct 661 CCGAATGCTGTTACATATACTACAATCCTGAAGCTATATTTTAAGACCAGGAGGATTAGA 720
Query 741 AGAGGGCTTCAATTGTTCTTAGAGATGAAAAGAGAAGGGTATACGTATGACGGGTATGCG 800
||||||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct 721 AGAGGGCTTCAGTTGTTCTTAGAGATGAAAAGAGAAGGGTACACTTATGATGGGTATGCG 780
Query 801 TATTTTGCGGTTGTTAGTGCTTTGATTAAGACAGGTAGAACGAAAGAGGCGTATGAGTAT 860
|| || |||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 781 TACTTCGCGGTTGTTAGTGCTTTGATTAAGACGGGTAGAACGAAAGAGGCTTATGAGTAT 840
Query 861 ATGCAAGAGCTAGTTAGGAAAGGTAGGAGACATGACATTGTTTCGTACAACACATTGTTG 920
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 841 ATGCAAGAGTTAGTTAGGAAAGGTAGGAGACATGACATTGTTTCGTATAACACATTGTTG 900
Query 921 AATCTGTATTTTAAAGACGGGAATTTGGATGCGGTGGATGATTTGTTAGGAGAGATAGAG 980
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 901 AATCTGTATTTTAAAGACGGGAATTTGGATGCGGTCGATGATTTGTTAGGAGAGATAGAG 960
Query 981 CGGAAAGGAATGAAAGCAGACGAGTATACACACACGATTATAGTCAATGGTTTGTTAAGG 1040
|||| |||||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 961 CGGAGAGGAATGAAAGCGGATGAGTATACACACACGATTATAGTTAATGGTTTGTTAAGG 1020
Query 1041 ACAGGACAGACGAGAAGAGCTGAGGAGCATTTTGTAAGTATGGGAGAGATGGGGATTGGA 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ACAGGACAGACGAGAAGAGCTGAGGAGCATTTTGTAAGTATGGGAGAGATGGGGATTGGA 1080
Query 1101 TTGAATCTTGTGACTTGTAACTGTTTGGTTGATGGATTGTGTAAAGCGGGTCACGTGGAC 1160
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1081 TTGAATCTCGTGACTTGTAACTGTTTGGTTGATGGATTGTGTAAAGCGGGTCATGTGGAC 1140
Query 1161 CGGGCGATGAGATATTTTGAGTCGATGGAAGTGAAAGACGAGTATACTTACACCTCTGTT 1220
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1141 CGGGCGATGAGATATTTTGAGTCGATGGAAGTGAAAGATGAGTATACTTACACCTCTGTT 1200
Query 1221 GTGCATAATCTCTGTAAAGACATGAGGTTTGTTTGTGCTTCAAAGCTGCTATTGTCGTGT 1280
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GTGCATAATCTTTGTAAAGACATGAGGTTTGTTTGTGCTTCAAAGCTGCTATTGTCGTGT 1260
Query 1281 TACAATAAGGGAATTAAGATTCCAACATCAGCGAGACGGGCGGTTTTGTCGGGTTTACGG 1340
|||||||| |||||||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 1261 TACAATAAAGGAATTAAGATTCCGACATCGGCGAGACGAGCGGTTTTGTCGGGTTTACGG 1320
Query 1341 ATGTCTGGGTGTTACGGTGAAGCGAGAAAGGCGAAGGCCAAAATGAAACTGACCCTGGTT 1400
|||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1321 ATGTCTGGATGTTACGGTGAAGCGAGGAAGGCGAAGGCCGAAATGAAACTGACCCTGGTT 1380
Query 1401 GGGAATTCCT 1410
||||||||||
Sbjct 1381 GGGAATTCCT 1390
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70682367360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5