BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946428

Length=618
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G17870.1 | Symbols: PYR1, RCAR11 | Polyketide cyclase/dehydr...   959    0.0  


> AT4G17870.1 | Symbols: PYR1, RCAR11 | Polyketide cyclase/dehydrase 
and lipid transport superfamily protein | chr4:9928678-9929518 
FORWARD LENGTH=841
Length=841

 Score =  959 bits (519),  Expect = 0.0
 Identities = 563/584 (96%), Gaps = 4/584 (1%)
 Strand=Plus/Plus

Query  18   ACCATGCCTTCCGAGTTAACACCAGAAGAACGATCGGAACTAAAACAA-TCAATCGGCGA  76
            ||||||||||| ||||||||||||||||||||||||||||||||| || ||||||| |||
Sbjct  112  ACCATGCCTTCGGAGTTAACACCAGAAGAACGATCGGAACTAAAA-AACTCAATCGCCGA  170

Query  77   GTTCCACACATACCAACTCGGTCCAGGAAGCTGTTCTTCACTCCACGCGCAACGAATCCA  136
            |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct  171  GTTCCACACATACCAACTCGATCCAGGAAGCTGTTCATCACTCCACGCGCAACGAATCCA  230

Query  137  CGCGCCGCCGGAACTCGTCTGGTCAATCGTCA-GACGATTCGACAAACCACAAACATACA  195
            |||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct  231  CGCGCCTCCGGAACTCGTCTGGTCAATCGT-ACGACGATTCGACAAACCACAAACATACA  289

Query  196  AACACTTCATCAAATCCTGCTCCGTCGAACAAAACTTCCAGATGCGCGTCGGATGCACGC  255
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  290  AACACTTCATCAAATCCTGCTCCGTCGAACAAAACTTCGAGATGCGCGTCGGATGCACGC  349

Query  256  GCGACGTGATCGTCATCAGTGGATTACCGGCCAACACATCAACGGAAAGGCTCGATATAC  315
            ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct  350  GCGACGTGATCGTCATCAGTGGATTACCGGCGAACACATCAACGGAAAGACTCGATATAC  409

Query  316  TCGACGACGAACGGAGAGTTACCGGATTCAGTATCATCGGAGGCGAACATAGGCTGACGA  375
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  410  TCGACGACGAACGGAGAGTTACCGGATTCAGTATCATCGGAGGCGAACATAGGCTGACGA  469

Query  376  ATTACAAATCGGTGACGACGGTGCATAGGTTCGAGAAAGAGAATCGGATCTGGACGGTGG  435
            |||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  470  ATTACAAATCCGTTACGACGGTGCATCGGTTCGAGAAAGAGAATCGGATCTGGACGGTGG  529

Query  436  TTTTGGAATCGTATGTTGTTGATATGCCGGAAGGTAACTCGGAGGATGATACACGTATGT  495
            |||||||||| || || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct  530  TTTTGGAATCTTACGTCGTTGATATGCCGGAAGGTAACTCGGAGGATGATACTCGTATGT  589

Query  496  TTGCTGATACGGTGGTGAAGCTTAATTTGCAGAAACTCGCGACGGTTGCGGAAGCTATGG  555
            ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  590  TTGCTGATACGGTTGTGAAGCTTAATTTGCAGAAACTCGCGACGGTTGCTGAAGCTATGG  649

Query  556  CTCGTAACTCCGGTGACGGAAGTGGTTCTCAGGTGACGTGaaaa  599
            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  650  CTCGTAACTCCGGTGACGGAAGTGGTTCTCAGGTGACGTGAAAA  693



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29788849171


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5