BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946431
Length=1317
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17840.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1989 0.0
> AT4G17840.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Abortive infection protein (InterPro:IPR003675); BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT2G35260.1);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr4:9918052-9920475 REVERSE LENGTH=1724
Length=1724
Score = 1989 bits (1077), Expect = 0.0
Identities = 1244/1323 (94%), Gaps = 17/1323 (1%)
Strand=Plus/Plus
Query 1 TGAGAGCCGTCGCATGTTATAAATGGGTCTTCCTTTGTTGTCTTGTAGTACCACAAGAGT 60
|||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 264 TGAGAGTTGTCGCATGTTATAAATGGGTCTTCCTTTATTGTCTTGTAGTTCCACAAGAGT 323
Query 61 CA--CTCTC-TCGTCTTCTTCTTCGTCTTGGTGTAGTAGCGGAAGCGGTGGATTTCGGAG 117
|| ||||| || ||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 324 CACTCTCTCTTCTTCTTCTTCTTCATCTTGGTGTAGTAGCGGAAGCGGTGGATTT---AG 380
Query 118 TAGTAATTGTAGTTCTAAGCTTTTCGATTCTCCGGCGAGTTCGAGATCGGATTTTAAGAA 177
| | ||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 381 --G--A--GTAGTTCTAAGCTTTTCGATTCTCCGGCGTGTTCGAGATCGGATTTGAAGAA 434
Query 178 ACGTAACGGGAAGAGAAATTCACGGTTAAACGGACTTTCGTTAGAGAAATT-AGAGTCAG 236
||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct 435 ACGTAGCGGGAAGAGAAATTCACGGTTAAACGGACTTTCGTTAGAGAAATTAAG-GTC-G 492
Query 237 -TTACAGCGTCGTCGCCATCCGCTGGACAGAGCAGCGGTGAAGTGATCGACGACGGAGAT 295
||| ||| |||||| | ||||||||||||||||| | |||||||||||||||||||||
Sbjct 493 ATTAAAGCATCGTCGTCTTCCGCTGGACAGAGCAGTAGCGAAGTGATCGACGACGGAGAT 552
Query 296 ACGGCGGCGCGTGGTTTAGCTGTTTCTTCTGGAGATGTAACGTCGGTGGGAAGTTTCAGT 355
||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||
Sbjct 553 GCGGCGGCGCGTGGTTTAGCTGTTACTTCAGGAGATGTAACGTCGGTTGGAAGTTTCAGT 612
Query 356 AGCGGCGAATTTGTTGGCGCCGGTAGTGGTGGTTTAGCTGGACCTTCTGGTGAGGTTACA 415
||||||||||||||||| || |||||||| ||||||||||||||||| |||||||||||
Sbjct 613 AGCGGCGAATTTGTTGGTGCTGGTAGTGGCGGTTTAGCTGGACCTTCAGGTGAGGTTACT 672
Query 416 TCCGTCGGCGAATTTGTCGGCGGAAGCGGCGGAGATTTTAAAGCTTGGGATAAGATCGAT 475
||||||||||| |||||||||||||||||||| |||||||| | |||||||||||||| |
Sbjct 673 TCCGTCGGCGAGTTTGTCGGCGGAAGCGGCGGGGATTTTAAGGATTGGGATAAGATCGGT 732
Query 476 GCTATTGTTAGGTTGAGTTATGGAATCGGAATATATTGTGGAATGGCTGTAGCAGGAAGA 535
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 733 GCTATTGTTAGGTTGAGTTATGGAATCGGAATATATTGTGGAATGGCAGTAGCAGGAAGA 792
Query 536 TTCATATGTGAAGTAGCAGGAATTGATTACACAGGAGGTTTTAATGCTTCTTTGGATACA 595
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 793 TTCATATGTGAAGTAGCAGGAATAGATTACACAGGAGGTTTTAATGCTTCTTTAGATACA 852
Query 596 ATTATTGCTGGACTTGGTTATGCTTCTCCTCCAATTATGGCTCTTCTCTTCATTCTTGAT 655
||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 853 ATTATCGCTGGACTTGGTTATGCTTCTCCACCTATTATGGCTCTTCTCTTCATTCTTGAT 912
Query 656 GATGAAGTTGTGAAATTGTCTCCGCATGCTCGTGCCATTAGAGATGTTGAAGATGAGGAG 715
||||||||||| |||||||| || |||||||||||||||||||||||||||||||| |||
Sbjct 913 GATGAAGTTGTTAAATTGTCGCCTCATGCTCGTGCCATTAGAGATGTTGAAGATGATGAG 972
Query 716 CTTAGAGGCTTCTTTCATGGAATGTCAGCTTGGCAGTTTATCTTAGTAGTTGCTGCAAGT 775
||| |||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 973 CTTCGAGGTTTCTTTCAAGGAATGTCAGCTTGGCAGTTTATCTTAGTAGTTACTGCAAGT 1032
Query 776 TCAGTTGGAGAAGAGCTCTTCTATCGCGCTGCGTTTCAGGGTGCACTAGCTGATATATTC 835
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1033 TCAGTTGGAGAAGAGCTCTTCTATCGTGCTGCGTTTCAGGGTGCACTAGCTGATATATTC 1092
Query 836 CTAAGGGGAACAGATCTCATCTCGGATTCTCGAGGAATGGTCGCTTTGACTGGACTCTTG 895
|||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1093 CTAAGGGGCACAGATCTTATCTCGGATTCTCGAGGAATGGTTGCTTTGACTGGACTCTTG 1152
Query 896 CCACCATTTGTACCATTTGCTCAAGTCTTTGCAGCCACTATTACAGCCGCTCTCACTGGT 955
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1153 CCACCATTTGTACCATTTGCTCAAGTATTTGCAGCCACTATTACAGCCGCTCTCACTGGT 1212
Query 956 TCTCTCTATTACGTCGCTGCTTCCCCTAAAGATCCAACTTATATAATGGCACCGGTCTTG 1015
|||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 TCTCTCTACTACATAGCTGCTTCCCCTAAAGATCCAACTTATATAATGGCACCGGTCTTG 1272
Query 1016 AAAACTCGCTCTGCCCGTGATGAGCTGAAGAAGTTATTTGCAGCGTGGTACGAGCGAAGA 1075
||||||||||||||||| || |||||||||||||| |||||||||||||| |||||||||
Sbjct 1273 AAAACTCGCTCTGCCCGAGACGAGCTGAAGAAGTTGTTTGCAGCGTGGTATGAGCGAAGA 1332
Query 1076 CAGATGAAGAAAATCTACTCTCCTCTTCTCGAAGGGCTTTTGGGTCTATACCTCGGCTTT 1135
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1333 CAGATGAAGAAAATCTACTCTCCTCTTCTTGAAGGGCTTTTGGGTCTATACCTCGGCTTT 1392
Query 1136 GAATGGATTCAGACAAACAATCTTCTTGCTCCTATCATCACACATGGTATATACTCTGCC 1195
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1393 GAATGGATTCAGACAAACAATCTTCTTGCTCCTATCATCACACATGGTATATACTCAGCC 1452
Query 1196 GTTGTATTGGGGAATGGTCTCTGGAAACTACACCATCATCAGCAAAGACTCCGGCTACGC 1255
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1453 GTTGTATTGGGTAATGGTCTCTGGAAACTACACCATCATCAGCAAAGACTCCGGCTACGT 1512
Query 1256 GTTCAGAAACTTGAAACTGAAGGTGACGACAACTCAAGATAGATAAATAACTGAATAAA- 1314
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1513 GTTCAGAAACTTGAAACTGAAGGTGACAACAACTCAAGATAGATAAATAACTGTATAAAA 1572
Query 1315 CAT 1317
|||
Sbjct 1573 CAT 1575
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64808903595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5