BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946435
Length=831
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17790.1 | Symbols: | SNARE associated Golgi protein family... 1314 0.0
> AT4G17790.1 | Symbols: | SNARE associated Golgi protein family
| chr4:9891051-9892807 FORWARD LENGTH=1301
Length=1301
Score = 1314 bits (711), Expect = 0.0
Identities = 797/836 (95%), Gaps = 16/836 (2%)
Strand=Plus/Plus
Query 1 tctctctctctcG--ATCGATACAAGAGAGATGGAGAGAGAAGAAGGAG--A-AACAACA 55
||||||||||||| |||||||||||||||||||||| ||||||||||| | |||||||
Sbjct 345 TCTCTCTCTCTCGATATCGATACAAGAGAGATGGAGAAAGAAGAAGGAGAAACAACAACA 404
Query 56 ATGATCGGCGTTGTT---------CCGGCGAAATCAGCGACTCCGATATATTCTCTGAGC 106
| ||||||||||||| |||||||||| | |||||||||||||||||||||||
Sbjct 405 ACGATCGGCGTTGTTCCGGCGGCGCCGGCGAAATTACCGACTCCGATATATTCTCTGAGC 464
Query 107 TTTTGGGAGGTCACGGCAGCTTCCGGCGTCGTTTTAGGGTTTCTTTTGGGACTTGTTTGC 166
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 465 TTTTGGGAGGTCACGGCAGCTTCCGGCGTCGTTTTAGGGTTTATTTTGGGTCTTGTTTGC 524
Query 167 GTTTATCTCACAATGCCTCAATCTGATTACAG-TTTCCTCAAGTTACCTCGTAATCTCGA 225
|||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||
Sbjct 525 GTTTATCTCACAATGCCTCAATCTGATTACAGCTTT-CTCAAGCTACCTCGTAATCTCGA 583
Query 226 AGATCTTCAGATTCTTAGAGATAATCTTGAGATATACACAAGTGATTACACAGTTCAAGT 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 AGATCTTCAGATTCTTAGAGATAATCTTGAGATATACACAAGTGATTACACAGTTCAAGT 643
Query 286 TCTTGTTGGATATTGTCTGGTCTACGTTTTTATGCAGACGTTCATGATTCCTGGAACAGT 345
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 644 TCTTGTTGGATATTGTCTGGTGTACGTTTTTATGCAGACGTTCATGATTCCTGGAACTGT 703
Query 346 GTTCATGTCTTTGCTTGCTGGTGCTCTCTTTGGAGTTGTCAAAGGAATGGCTCTTGTTGT 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 GTTCATGTCTTTGCTTGCTGGTGCTCTCTTTGGAGTTGTCAAAGGAATGGCTCTTGTTGT 763
Query 406 CTCCACTGCAACAGCTGGTGCTTCCTCTTGTTATTTTCTCTCGAAGCTCATCGGTAGACC 465
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 764 CTCCACTGCAACAGCTGGTGCTTCCTCTTGTTATTTCCTCTCTAAGCTCATTGGTAGACC 823
Query 466 TTTACTCTTCTCGCTTTGGCCTGACAAGCTCGTATTCTTCCAAGATCAGGTTGCGAGAAG 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 TTTACTCTTCTCGCTTTGGCCTGACAAGCTCGTATTCTTCCAAGATCAGGTTGCGAGAAG 883
Query 526 AAAAGATCGGTTGCTGAATTATATGTTGTTCTTGAGACTAACACCAACATTGCCTAACAC 585
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 884 AAAAGATCGGTTGCTGAATTATATGCTGTTCTTGAGGCTAACACCAACATTGCCTAACAC 943
Query 586 TTTCATTAATTTTGCTTCTCCAATTGTTGATGTTCCTTACCATATCTTCTTCCTCGCTAC 645
|||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 944 TTTCATTAATGTTGCTTCTCCAATTGTTGATGTTCCTTATCATATCTTCTTCCTAGCTAC 1003
Query 646 ATTCATCGGTCTGATTCCTGCTGCATTTGTCACTGTCCGGGCTGGGCTTGCTCTTGGAGA 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 ATTCATCGGTCTGATTCCTGCTGCATTTGTCACTGTCCGGGCTGGGCTTGCTCTTGGAGA 1063
Query 706 GCTAAAATCATTGGGAGATCTCTATGACTTCAGCTCCATGGCGACTCTGTGTCTCATCGG 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1064 GCTAAAATCATTGGGAGATCTCTATGACTTCAGCTCCATGGCGACTCTGTGTCTCATTGG 1123
Query 766 TGTGCTCTCTGTGACTCCAACACTAATTAGCAAGAAAAAAGCCTAGAAGAAGAAGA 821
||||||||||||||||||||| |||||| |||||||| |||| ||||||| |||||
Sbjct 1124 TGTGCTCTCTGTGACTCCAACCCTAATTGGCAAGAAACAAGCATAGAAGATGAAGA 1179
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40488722482
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5