BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946451
Length=1022
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17690.1 | Symbols: | Peroxidase superfamily protein | chr4... 1583 0.0
> AT4G17690.1 | Symbols: | Peroxidase superfamily protein | chr4:9846127-9847107
FORWARD LENGTH=981
Length=981
Score = 1583 bits (857), Expect = 0.0
Identities = 928/963 (96%), Gaps = 2/963 (0%)
Strand=Plus/Plus
Query 39 GTTCTCTTCCTAGTCCTAGTCTTTGTCCCGTCTATAAATTCGGCACCACCGCCAAATTTA 98
||||||||| | |||||||||||||||||||||||| | ||||||||||| |||||||||
Sbjct 19 GTTCTCTTCGTCGTCCTAGTCTTTGTCCCGTCTATATACTCGGCACCACCACCAAATTTA 78
Query 99 ACAAAAGATTATTACCAAAAAACATGTCCCGATTTCAGTAAAATCGTACGTGAAACAGTT 158
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 79 ACAAAAGATTATTACCAAAAAACATGTCCCGATTTCAATAAAATCGTACGTGAAACCGTT 138
Query 159 ACACCAAAGCAAGGCCAGCAGCCAACGACAGCTGCTGGAACACTCCGTCTCTTTTTCCAT 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 139 ACACCAAAGCAAGGCCAGCAGCCAACGACAGCTGCTGGAACACTCCGTCTCTTTTTCCAT 198
Query 219 GATTGTTTCATGGAAGGATGTGATGCTTCCGTCCTTATCGCTACAAATTCTTTCAACAAA 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 GATTGTTTCATGGAAGGATGTGATGCTTCCGTCCTTATCGCTACAAATTCTTTCAACAAA 258
Query 279 GCCGAACGCGACGATGATCTCAACGAGTCTCTTCCGGGAGATGCATTCGACATTGTGACT 338
|||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 259 GCCGAACGTGACGATGACCTCAACGAGTCGCTTCCGGGAGATGCATTCGACATTGTGACT 318
Query 339 CGCATCAAAACCGCTCTTGAATTGTCTTGTCCCGGGGTGGTGTCTTGCGCAGACATCCTG 398
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 319 CGCATCAAAACCGCTCTTGAATTGTCTTGTCCCGGGGTGGTGTCCTGCGCAGACATCCTG 378
Query 399 GCTCAAGCCACACGTGACCTTGTCACAATGGTTGGTGGGCCTTTCTATGAAGTCAAATTG 458
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 379 GCTCAGGCCACACGTGACCTTGTCACAATGGTTGGTGGGCCTTTCTATGAAGTCAAACTG 438
Query 459 GGCCGTAAAGATGGTTTTGAGTCGAAAGCTCATAAAGTCAAAGGAAATTTACCTTTAGCG 518
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 439 GGCCGTAAAGATGGTTTTGAGTCAAAAGCCCATAAAGTCAAAGGAAATTTACCTTTAGCG 498
Query 519 AACCAATCTGTCCCTGACATGTTATCGATATTCAAGAAGAATGGTTTCACTCTAAAGGAG 578
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 AACCAATCCGTCCCCGACATGTTATCGATATTCAAGAAGAATGGTTTCACTCTAAAGGAG 558
Query 579 CTGGTTGCGTTAAGTGGCGGGCACACAATCGGATTCTCACACTGCAAAGAATTCAGCAAC 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 559 CTGGTTGCGTTAAGTGGCGGGCACACAATCGGATTCTCACACTGCAAAGAATTCAGCAAC 618
Query 639 CGGATATTCCCGAAGGTTGATCCAGAACTCAACCCGAAATTCGCAGGCGTTCTTAAAGAT 698
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 619 CGGATATTCCCGAAGGTTGATCCAGAACTCAACGCGAAATTCGCAGGAGTTCTTAAAGAT 678
Query 699 CTATGCAAGAATTTCGAGACCAATAAGACGATGGCAGCGTTTCTCGATCCGGTGACACCA 758
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 679 CTATGCAAGAATTTCGAAACCAATAAGACGATGGCAGCATTTCTCGATCCGGTGACACCG 738
Query 759 GGAAAATTCGATAATATGTATTTCAAGAACTTGAAACGAGGTCTTGGATTGTTAGCTTCC 818
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 739 GGAAAATTCGATAATATGTATTTCAAGAACTTGAAACGAGGTCTTGGACTGTTAGCTTCC 798
Query 819 GACCATATCTTGTTTAAAGA-CAGTAGCACGAGACCGTTTGTGGAATTATATGCGAATAA 877
|||||||| ||||||||||| | |||||||||||||||||| |||||||||||||||||
Sbjct 799 GACCATATATTGTTTAAAGATCC-TAGCACGAGACCGTTTGTAGAATTATATGCGAATAA 857
Query 878 TCAGACGGCTTTCTTCGAAGATTTTGCACGGGCTATGGAGAAACTAGGCACGGTTGGTGT 937
|||||||||||||||||| ||||||||||| || |||||||||||||||| |||||||||
Sbjct 858 TCAGACGGCTTTCTTCGAGGATTTTGCACGTGCCATGGAGAAACTAGGCAGGGTTGGTGT 917
Query 938 TAAAGGCGAAAAAGATGGAGAGGTAAGACGTAGATGTGATCACTTCAACAACCTTAACGT 997
||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||
Sbjct 918 TAAAGGCGAAAAAGATGGAGAAGTGAGACGTAGATGTGATCACTTCAACAAGCTTAACGT 977
Query 998 ATA 1000
|||
Sbjct 978 ATA 980
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50083444559
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5