BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946460
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17615.1 | Symbols: CBL1, ATCBL1, SCABP5 | calcineurin B-lik... 1133 0.0
AT5G47100.1 | Symbols: CBL9, ATCBL9 | calcineurin B-like protei... 699 0.0
> AT4G17615.1 | Symbols: CBL1, ATCBL1, SCABP5 | calcineurin B-like
protein 1 | chr4:9816452-9819312 FORWARD LENGTH=1241
Length=1241
Score = 1133 bits (613), Expect = 0.0
Identities = 661/684 (97%), Gaps = 3/684 (0%)
Strand=Plus/Plus
Query 1 CGTCTTATTTTCATCTGTAAATGGGCTGCTTCCACTCAAAGGCAGCAAGAGAATTTCGAG 60
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 264 CGTCTTA-TTTCATCTGTAAATGGGCTGCTTCCACTCAAAGGCAGCAAAAGAATTTCGAG 322
Query 61 GACACGAAGACCCTGTTAAGCTTGCCTCTGAGACAGCTTTTAGTGTGAGTGAGGTTGAAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 GACACGAAGACCCTGTTAAGCTTGCCTCTGAGACAGCTTTTAGTGTGAGTGAGGTTGAAG 382
Query 121 CATTGTTTGAGCTGTTCAAGAGCATAAGCAGTTCGGTTGTTGATGATGGTCTGATAAACA 180
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 383 CATTATTTGAGCTATTCAAGAGCATAAGCAGTTCGGTTGTTGATGATGGTCTGATTAACA 442
Query 181 AGGAGGAGTTTCAACTTGCATTGTTCAAAAGCCGGAAGAGGGAGAATATATTTGCTAATA 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 443 AGGAGGAGTTTCAACTTGCTTTGTTCAAAAGCCGGAAGAGGGAGAATATATTTGCTAATA 502
Query 241 GGATATTTGATATGTTTGATGTTAAACGAAAAGGAGTCATCGATTTTGGGGACTTTGTAA 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 503 GGATATTTGATATGTTTGATGTTAAACGAAAAGGAGTCATCGATTTCGGGGACTTTGTAA 562
Query 301 GATCACTCAATGTTTTCCACCCAAATGCTTCTCTAGAAGACAAAATAGATTTTACATTTA 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 563 GATCACTCAATGTTTTCCACCCCAATGCTTCTCTAGAAGACAAAATAGATTTTACGTTTA 622
Query 361 GGCTCTACGACATGGACTGCACGGGTTACATTGAACGCCAAGAGGTCAAGCAGATGTTGA 420
|||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 623 GGCTTTACGACATGGACTGCACGGGTTACATTGAACGACAAGAGGTCAAGCAAATGTTGA 682
Query 421 TCGCCCTTCTCTGCGAATCTGAAATGAAACTGGCTGATGAAACCATAGAGATTATACTTG 480
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 683 TCGCGCTTCTCTGCGAATCTGAAATGAAACTGGCTGATGAAACCATAGAGATAATACTCG 742
Query 481 ATAAGACATTTGAAGATGCAGACGTGAATCAAGATGGAAAGATTGATAAGTTAGAGTGGA 540
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 743 ATAAGACATTTGAAGATGCAGACGTGAATCAAGATGGAAAAATTGATAAATTAGAGTGGA 802
Query 541 GTGATTTCGTAAACAAAAATCCATCATTGCTAAAGATCATGACTCTTCCATATCTCAGGG 600
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 803 GTGATTTCGTAAACAAAAATCCATCATTGCTTAAGATCATGACTCTTCCATATCTCAGGG 862
Query 601 ATATAACGACAACGTTTCCGAGTTTTGTCTTCAATTCGGAGGTCGATGAGATTGCCACAT 660
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 863 ATATTACGACAACGTTTCCGAGTTTTGTCTTCCATTCGGAGGTCGATGAGATTGCCACAT 922
Query 661 GAAGAAACAATA-TGGTTGAAGAC 683
|||||||||| | ||||| |||||
Sbjct 923 GAAGAAACAA-ACTGGTTTAAGAC 945
> AT5G47100.1 | Symbols: CBL9, ATCBL9 | calcineurin B-like protein
9 | chr5:19129640-19132283 REVERSE LENGTH=1223
Length=1223
Score = 699 bits (378), Expect = 0.0
Identities = 572/666 (86%), Gaps = 11/666 (2%)
Strand=Plus/Plus
Query 11 TCATCTGTAAATGGGCTGCTTCCACTCAAAGGCAGCAAGAGAATTTCGAGGA-CACGAAG 69
||||| ||||||||| || ||||| || | ||| || |||||||||| || ||||||
Sbjct 316 TCATCCGTAAATGGGTTGTTTCCATTCCACGGCTGCCAGAGAATTTC-CCGATCACGAAA 374
Query 70 ACCCTGTTAAGCTTGCCTCTGAGACAGCTTTTAGTGTGAGTGAGGTTGAAGCATTGTTTG 129
||||||| |||||||| |||||||| ||||||||||| ||||| ||||||||||||| ||
Sbjct 375 ACCCTGTGAAGCTTGCTTCTGAGACTGCTTTTAGTGTTAGTGAAGTTGAAGCATTGTATG 434
Query 130 AGCTGTTCAAGAGCATAAGCAGTTCGGTTGTTGATGATGGTC-TGATAAACAAGGAGGAG 188
| ||||||||||||||||||| ||||||||||| ||||| | ||||||||||||| |||
Sbjct 435 AATTGTTCAAGAGCATAAGCAGCTCGGTTGTTGACGATGG-CTTGATAAACAAGGAAGAG 493
Query 189 TTTCAACTTGCATTGTTCAA-AAGCCGGAAGAGGGAGAATATATTTGCTAATAGGATATT 247
||||||||||| |||||||| || | | |||| || ||| | ||||| |||||||||||
Sbjct 494 TTTCAACTTGCTTTGTTCAAGAA-CAGAAAGAAAGAAAATTTGTTTGCCAATAGGATATT 552
Query 248 TGATATGTTTGATGTTAAACGAAAAGGAGTCATCGATTTTGGGGACTTTGTAAGATCACT 307
|||| | |||||||||||||||||||| || || |||||||| |||||||| ||||||||
Sbjct 553 TGATTTATTTGATGTTAAACGAAAAGGCGTAATTGATTTTGGAGACTTTGTGAGATCACT 612
Query 308 CAATGTTTTCCACCCAAATGCTTCTCTAGAAGACAAAATAGATTTTACATTTAGGCTCTA 367
|||||||||||| || |||||||| ||||| || |||| ||| ||||| |||||||| ||
Sbjct 613 CAATGTTTTCCATCCTAATGCTTCCCTAGAGGAGAAAACAGACTTTACCTTTAGGCTTTA 672
Query 368 CGACATGGACTGCAC-GGGTTACATTGAACGCCAAGAGGTCAAGCAGATGTTGATCGCCC 426
||||||||||||||| || || |||||| ||||||||||| |||||||||||||| || |
Sbjct 673 CGACATGGACTGCACAGGCTT-CATTGAGCGCCAAGAGGTGAAGCAGATGTTGATTGCAC 731
Query 427 TTCTCTGCGAATCTGAAATGAAACTGGCTGATGAAACCATAGAGATTATACTTGATAAGA 486
|||||||||||||||||||||||||||||||||| || |||||||| ||||||||| |||
Sbjct 732 TTCTCTGCGAATCTGAAATGAAACTGGCTGATGATACAATAGAGATGATACTTGATCAGA 791
Query 487 CATTTGAAGATGCAGACGTGAATCAAGATGGAAAGATTGATAAGTTAGAGTGGAGTGATT 546
||||||| || ||||| ||| ||| |||||||||||||||||| ||| ||||| |||
Sbjct 792 CATTTGAGGACGCAGATGTGGATCGGGATGGAAAGATTGATAAGACAGAATGGAGCAATT 851
Query 547 TCGTAAACAAAAATCCATCATTGCT-AAAGATCATGACTCTTCCATATCTCAGGGATATA 605
|||| | |||||| ||||| ||||| ||| |||||||||||||| |||||||||||||||
Sbjct 852 TCGTTATCAAAAACCCATCTTTGCTTAAA-ATCATGACTCTTCCGTATCTCAGGGATATA 910
Query 606 ACGACAACGTTTCCGAGTTTTGTCTTCAATTCGGAGGTCGATGAGATTGCCACATGAA-G 664
||||| || ||||||||||| || || || |||||||| || |||||||| || |||| |
Sbjct 911 ACGACGACATTTCCGAGTTTCGTATTTAACTCGGAGGTGGACGAGATTGCGACGTGAAAG 970
Query 665 AAACAA 670
| ||||
Sbjct 971 AGACAA 976
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33054068726
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5