BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946464
Length=801
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47120.1 | Symbols: ATBI-1, BI-1, ATBI1, BI1 | BAX inhibitor... 752 0.0
AT4G17580.1 | Symbols: | Bax inhibitor-1 family protein | chr4... 67.6 2e-10
> AT5G47120.1 | Symbols: ATBI-1, BI-1, ATBI1, BI1 | BAX inhibitor
1 | chr5:19136023-19137942 FORWARD LENGTH=1149
Length=1149
Score = 752 bits (407), Expect = 0.0
Identities = 646/759 (85%), Gaps = 26/759 (3%)
Strand=Plus/Plus
Query 17 AACAATGGAAGCGTTCTCTTCCTTCTTTGACTCTCAGA-ATCGTAG--G-AGTTGGAGCT 72
||||||||| ||||||||||||||||| || ||||| | | |||| | || |||||||
Sbjct 45 AACAATGGATGCGTTCTCTTCCTTCTTCGATTCTCA-ACCTGGTAGCAGAAGCTGGAGCT 103
Query 73 ATGATTCTCTCAAGAACTTCCGTCAGATCTCTCCGGCCGTGCAGAATCATCTTAAACGGG 132
|||||||||| || |||||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct 104 ATGATTCTCTTAAAAACTTCCGTCAGATTTCTCCAGCCGTTCAGAATCATCTTAAACGGG 163
Query 133 TTTATCTGACGTTATGTTGTGCTCTTGTTGCATCTGCATTTGGAGCTTACCTCCATATGA 192
||||| |||| ||||||||||||||||| || ||||| |||||||||||||||||| ||
Sbjct 164 TTTATTTGACCTTATGTTGTGCTCTTGTGGCGTCTGCCTTTGGAGCTTACCTCCATGTGC 223
Query 193 TCTGGACTATTGGTGGAATTCTCACTACTCTCGGAAGCT-TTGGAAGC-ATGATTTGGTT 250
|||||| ||| || || ||||| || || | ||| | | |||||| | ||||||||| |
Sbjct 224 TCTGGAATATCGGCGGTATTCTTACAACGATTGGATG-TATTGGAA-CTATGATTTGGCT 281
Query 251 GATTTCCA-CTCCTCCGTATCAGCAATCATC-AAAGAGGCTTTCCCTTCTGTTTCTCTCT 308
||| || |||||| ||| | || || | ||| |||||||| ||||||||| | |||
Sbjct 282 CCTTT-CATGTCCTCCTTAT--G-AA-CACCAAAAAAGGCTTTCTCTTCTGTTTGTGTCT 336
Query 309 GCTGTTCTTCAAGGTGCTTCAGTAGGTCCATTGATTAAAGTGGCCATTGATGTTGACCCA 368
||||||||| |||||||||| || || || ||||| |||||||| |||||||||||||||
Sbjct 337 GCTGTTCTTGAAGGTGCTTCTGTTGGCCCCTTGATCAAAGTGGCAATTGATGTTGACCCA 396
Query 369 AGCATCCTGATCACTGCATTTGTGGGAACAGCAG-TGGCGTTTGTGTGTTTCTCGGTTGC 427
|||||||| |||||||||||||| ||||| || | | |||||||| |||||||| | ||
Sbjct 397 AGCATCCTTATCACTGCATTTGTTGGAACTGC-GATAGCGTTTGTCTGTTTCTCAGCAGC 455
Query 428 AGCAATGTTGGCAAGGCGTAGAGAGTACCTTTACCTTGGAGGTCTGCTTTCTTCT-GCTC 486
||||||||| ||||| || || ||||| || ||||||||||| |||||||| ||| |||
Sbjct 456 AGCAATGTTAGCAAGACGCAGGGAGTATCTCTACCTTGGAGGACTGCTTTCATCTGGCT- 514
Query 487 TGTCCATCCTTATGTGGCTGCAATTTGCCTCTTCCATCTTTGGAGGCTCAGCATCTGTCT 546
|||| || || |||||||| || ||||||||||| |||||||| ||||| |||||| |||
Sbjct 515 TGTCTATGCTAATGTGGCTCCAGTTTGCCTCTTCAATCTTTGGTGGCTCTGCATCTATCT 574
Query 547 TTAAGTTTGAGCTATATTTTGGACTGTTGATCTTTGTGGGATACATGGTGGTGGACACAC 606
||||||||||| | || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 575 TTAAGTTTGAGTTGTACTTTGGACTTTTGATCTTTGTGGGATACATGGTGGTGGACACAC 634
Query 607 AAGAGATAATCGAGAAAG-CACACCTAGGTGACATGGACTATGTCAAACATTCTCTT-AC 664
||||||| || || |||| ||||||| ||||||||||||||||| |||||||| || ||
Sbjct 635 AAGAGATTATAGA-AAAGGCACACCTCGGTGACATGGACTATGTAAAACATTCG-TTGAC 692
Query 665 CCTTTTCACTGATTTTGTTGCTGTGTTTGTTCGAATTCTCATCATCATGTTGAAGAACTC 724
|||||||||||| ||||| |||||||||||||| ||||||||||| ||||||||||||||
Sbjct 693 CCTTTTCACTGACTTTGTAGCTGTGTTTGTTCGGATTCTCATCATAATGTTGAAGAACTC 752
Query 725 TGCTGACaa-gaaagagaagaagaagaaaagaagaaaCT 762
|| || || ||| ||||||||||||||||| |||||||
Sbjct 753 AGCAGATAAAGAA-GAGAAGAAGAAGAAAAGGAGAAACT 790
> AT4G17580.1 | Symbols: | Bax inhibitor-1 family protein | chr4:9789789-9791145
REVERSE LENGTH=744
Length=744
Score = 67.6 bits (36), Expect = 2e-10
Identities = 68/82 (83%), Gaps = 8/82 (10%)
Strand=Plus/Plus
Query 58 GTAGGAGTTGGAGCTATGATTCTCTCAAG-AACTTCCGTCA-G-A-TCTCTCCGGCCGTG 113
||| || ||||||| |||||| |||| || ||| | | ||| | | ||||||||||||||
Sbjct 14 GTACGATTTGGAGCCATGATTATCTC-AGAAAC-T-C-TCATGAATTCTCTCCGGCCGTG 69
Query 114 CAGAATCATCTTAAACGGGTTT 135
|||||||||||||| ||| |||
Sbjct 70 CAGAATCATCTTAAGCGGTTTT 91
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38981698072
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5