BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946473
Length=650
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17530.1 | Symbols: RAB1C, ATRAB1C, ATRABD2C | RAB GTPase ho... 1090 0.0
AT5G47200.1 | Symbols: ATRABD2B, ATRAB1A, RAB1A | RAB GTPase ho... 797 0.0
> AT4G17530.1 | Symbols: RAB1C, ATRAB1C, ATRABD2C | RAB GTPase
homolog 1C | chr4:9773548-9775607 REVERSE LENGTH=965
Length=965
Score = 1090 bits (590), Expect = 0.0
Identities = 631/651 (97%), Gaps = 2/651 (0%)
Strand=Plus/Plus
Query 1 GATCCAGCTACGAGATCAATCATGAATCCTGAATATGACTATTTGTTCAAGCTTTTGCTC 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 GATCCAGCTCCGAGATCAATCATGAATCCTGAATATGACTATTTGTTCAAGCTTTTGCTC 222
Query 61 ATTGGTGATTCTGGTGTTGGAAAGTCATGCTTGCTTCTAAGGTTTGCTGATGATTCCTAC 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 223 ATTGGTGATTCTGGTGTTGGAAAGTCGTGCTTGCTTCTAAGGTTTGCTGATGATTCCTAC 282
Query 121 CTGGATAGCTATATCAGCACCATTGGTGTTGACTTTAAAATCCGCACAGTCGAACAAGAT 180
||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 283 CTGGATAGCTACATCAGCACCATTGGTGTCGACTTTAAAATCCGAACAGTCGAACAAGAT 342
Query 181 GGAAAGACCATCAAACTCCAGATTTGGGATACCGCAGGCCAAGAGCGTTTCAGAACGATT 240
|||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 343 GGAAAGACCATCAAACTCCAGATTTGGGATACGGCAGGCCAGGAACGTTTCAGAACGATT 402
Query 241 ACTAGCAGTTACTACAGAGGAGCTCATGGAATAATTGTGACTTATGATGTAACAGATCTA 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 403 ACTAGCAGTTACTACAGAGGAGCTCATGGAATTATTGTGACTTATGATGTAACAGATCTA 462
Query 301 GAAAGCTTCAACAACGTCAAGCAATGGCTAAATGAAATCGACCGTTACGCCAGTGAGAAT 360
|||||||||||||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct 463 GAAAGCTTCAACAACGTCAAGCAATGGCTAAATGAAATCGACCGCTATGCAAGTGAGAAT 522
Query 361 GTTAACAAGCTACTGGTTGGGAACAAGTGTGATCTCACATCACAGAAAGTTGTATCCACT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 GTTAACAAGCTACTGGTTGGGAACAAGTGTGATCTCACATCACAGAAAGTTGTATCCACT 582
Query 421 GAGACAGCCAAGGCTTTCGCAGATGAACTTGGAATCCCATTCTTGGAAACAAGTGCTAAG 480
|||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 583 GAGACAGCTAAGGCTTTCGCTGATGAACTTGGGATCCCATTCTTGGAAACAAGTGCTAAG 642
Query 481 AATGCTACCAATGTCGAAGAAGCTTTCATGGCCATGACTGCTGCAATCAAGACAAGAATG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 643 AATGCTACCAATGTCGAAGAAGCTTTCATGGCCATGACTGCTGCAATCAAGACCAGAATG 702
Query 541 GCGAGCCAACCTGCAGGAGGATCTAAGCCACCAACGGTCCAGATCCGAGGACAACCTGTT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 GCGAGCCAACCTGCAGGAGGATCTAAGCCACCAACGGTCCAGATCCGAGGACAACCTGTT 762
Query 601 AACCAGCAATCAGGTTGCTGCTCCTCTTGATT-GTCTTTGGTAACACTTAA 650
|||||||||||||| ||||||||||||| ||| | ||||||||||||||||
Sbjct 763 AACCAGCAATCAGGCTGCTGCTCCTCTTAATTCG-CTTTGGTAACACTTAA 812
> AT5G47200.1 | Symbols: ATRABD2B, ATRAB1A, RAB1A | RAB GTPase
homolog 1A | chr5:19166902-19169026 FORWARD LENGTH=1044
Length=1044
Score = 797 bits (431), Expect = 0.0
Identities = 552/612 (90%), Gaps = 2/612 (0%)
Strand=Plus/Plus
Query 22 ATGAATCCTGAATATGACTATTTGTTCAAGCTTTTGCTCATTGGTGATTCTGGTGTTGGA 81
||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||
Sbjct 128 ATGAATCCTGAATATGACTATCTGTTCAAGCTTCTGCTTATTGGTGATTCTGGTGTTGGA 187
Query 82 AAGTCATGCTTGCTTCTAAGGTTTGCTGATGATTCCTACCTGGATAGCTATATCAGCACC 141
|| ||||||||||||||||| |||||||||||||| |||||||||||||| || ||||||
Sbjct 188 AAATCATGCTTGCTTCTAAGATTTGCTGATGATTCTTACCTGGATAGCTACATAAGCACC 247
Query 142 ATTGGTGTTGACTTTAAAATCCGCACAGTCGAACAAGATGGAAAGACCATCAAACTCCAG 201
|||||||||||||||||||| |||||||| || || || |||||||||||||||||||||
Sbjct 248 ATTGGTGTTGACTTTAAAATTCGCACAGTTGAGCAGGACGGAAAGACCATCAAACTCCAG 307
Query 202 ATTTGGGATACCGCAGGCCAAGAGCGTTTCAGAACGATTACTAGCAGTTACTACAGAGGA 261
|| ||||| || ||||||||||| |||||||| || || |||||||| ||||||||||||
Sbjct 308 ATCTGGGACACAGCAGGCCAAGAACGTTTCAGGACAATCACTAGCAGCTACTACAGAGGA 367
Query 262 GCTCATGGAATAATTGTGACTTATGATGTAACAGATCTAGAAAGCTTCAACAACGTCAAG 321
|||||||| || ||||| ||||||||||| ||||| ||||| |||||||||||||||||
Sbjct 368 GCTCATGGGATCATTGTCACTTATGATGTCACAGACCTAGAGAGCTTCAACAACGTCAAA 427
Query 322 CAATGGCTAAATGAAATCGACCGTTACGCCAGTGAGAATGTTAACAAGCTACTGGTTGGG 381
|||||||| |||||||| ||||||||||| || || ||||| ||||||||||||||||||
Sbjct 428 CAATGGCTGAATGAAATTGACCGTTACGCTAGCGAAAATGTGAACAAGCTACTGGTTGGG 487
Query 382 AACAAGTGTGATCTCACATCACAGAAAGTTGTATCCACTGAGACAGCCAAGGCTTTCGCA 441
|||||| |||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct 488 AACAAGAACGATCTCACTTCACAGAAAGTTGTATCCACTGAGACAGCTAAGGCTTTTGCA 547
Query 442 GATGAACTTGGAATCCCATTCTTGGAAACAAGTGCTAAGAATGCTACCAATGTCGAAGAA 501
||||||||||| |||||||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 548 GATGAACTTGGGATCCCATTCTTGGAAACAAGTGCTAAAAATGCAACCAATGTGGAAGAA 607
Query 502 GCTTTCATGGCCATGACTGCTGCAATCAAGACAAGAATGGCGAGCCAACCTGCAGGAGGA 561
||||||||||| |||||||||||||| |||||||||||||| |||||||| || |||||
Sbjct 608 GCTTTCATGGCTATGACTGCTGCAATTAAGACAAGAATGGCTAGCCAACCAGCTGGAGG- 666
Query 562 T-CTAAGCCACCAACGGTCCAGATCCGAGGACAACCTGTTAACCAGCAATCAGGTTGCTG 620
| | ||||||||||||||||||||||| ||||| || || |||||||||||||| || ||
Sbjct 667 TGCCAAGCCACCAACGGTCCAGATCCGTGGACAGCCAGTGAACCAGCAATCAGGCTGTTG 726
Query 621 CTCCTCTTGATT 632
|| ||||||||
Sbjct 727 TTCTTCTTGATT 738
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31396341875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5