BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946475
Length=748
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17510.1 | Symbols: UCH3 | ubiquitin C-terminal hydrolase 3 ... 893 0.0
AT4G17512.1 | Symbols: | Pseudogene of AT4G17510; UCH3; ubiqui... 486 1e-136
> AT4G17510.1 | Symbols: UCH3 | ubiquitin C-terminal hydrolase
3 | chr4:9766971-9768770 REVERSE LENGTH=970
Length=970
Score = 893 bits (483), Expect = 0.0
Identities = 657/739 (89%), Gaps = 20/739 (3%)
Strand=Plus/Plus
Query 1 TGACAGAGAAAAATCAGAAGATGACGACAG-TAGACGAAG-GTTATTCAGCTAAGAAATG 58
|||| |||||| ||| |||||| |||| | || || || ||| |||| |||||| |||
Sbjct 104 TGAC-GAGAAAGATCCTAAGATGGCGACCGCAAG-CG-AGAGTTCTTCATCTAAGAGATG 160
Query 59 GCTTCCACTTGAAGCTAACCCAGATGTTATCAATCAGTATCTTTGGGGACTTGGTCTTTC 118
||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||| |
Sbjct 161 GCTTCCACTTGAATCTAACCCAGATGTTATGAATCAGTATCTCTGGGGACTTGGTCTTGC 220
Query 119 TCCTGATGAAGTAGAGTGCAATGATGTGTTTGGCTTAGACGATGAACTTCTCGAGATGGT 178
|||||||||| ||||||||||||||||| ||| ||||||||||||||||| ||||||||
Sbjct 221 CCCTGATGAAGCAGAGTGCAATGATGTGTATGGGTTAGACGATGAACTTCTAGAGATGGT 280
Query 179 TCCAAAGCCTGTTCTTGCTGTTCTCTTTCTTTACCCAATCACCAAAAAGTGTGAAGAAGA 238
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 281 TCCAAAGCCTGTTCTTGCTGTTCTCTTCCTTTACCCAATCACCAAAAAGAGTGAAGAAGA 340
Query 239 GAGAATCCAGCAAGACAAAGAAATCAAGGAAAAGGTAAATCAGAGTGACAAAGTCTACTT 298
||||||| |||||||||| ||||| ||||||||||| || || || ||||| |||||
Sbjct 341 GAGAATCGAGCAAGACAAGGAAATTAAGGAAAAGGT---GCATAGCGATAAAGTTTACTT 397
Query 299 CATGAAACAAACTG-TGGATAATGCTTGTGGAACCATTGGGCTTCTTCATGCTATTGGGA 357
||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 398 TATGAAACAAACTGTTGG-TAATGCTTGTGGAACCATTGGTCTTCTTCATGCTATTGGGA 456
Query 358 ATATAACCTCTGAGATCAAACTCTCCGAGGGATCGTTCTTGGATAGATTCTTCAAATCCA 417
|||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 457 ATATTACCTCTGAAATCAAACTCTCCGACGGATCGTTCTTGGATAGATTCTTCAAATCCA 516
Query 418 CTGCCAATATGACTTCTATAGAGCGTG-CAAGGTTTCTTGAGAATGACAGTCAAATAGAA 476
||||||| |||||| |||| ||||||| ||| |||||| |||||||||||||||||||||
Sbjct 517 CTGCCAACATGACTCCTATGGAGCGTGCCAA-GTTTCTCGAGAATGACAGTCAAATAGAA 575
Query 477 GATGCTCATTCTGTAGCTGTTATAGCTGGTGATACAACGGCTTCAGACGAGGTGGACACG 536
|||||||||||||||||||||||||||||||||||| | |||||||| || | ||||||
Sbjct 576 GATGCTCATTCTGTAGCTGTTATAGCTGGTGATACACCTGCTTCAGAAGACGCAGACACG 635
Query 537 CATTTCATCTGTTTGGCTTGTGTAGATGGTGAGCTCTATGAACTTGATGGA-GATAGGGC 595
|||||||| ||||| ||||||||||| |||||||||||||||||||||||| || ||| |
Sbjct 636 CATTTCATTTGTTTAGCTTGTGTAGAAGGTGAGCTCTATGAACTTGATGGAAGAAAGG-C 694
Query 596 AGGGCC-AGTTTCACATGGTGCTTCCTCTCCAGCTACTTTGTT-ACAGGACGCAGTAAAA 653
||| || | ||||||| |||||||||||||||||||| | | | |||||||| ||||
Sbjct 695 AGGACCGA-TTTCACACGGTGCTTCCTCTCCAGCTACCCTCCTGA-AGGACGCAACAAAA 752
Query 654 GTGATAAAGACGATAATCGAGAAGAATCCAGATTCTCTCAACTTCAATGTGATAGCCATC 713
|||||||||| ||| |||||||||||||| | |||||||||||||| |||||||||||
Sbjct 753 GTGATAAAGAAGATGATCGAGAAGAATCCGGGCTCTCTCAACTTCAACCTGATAGCCATC 812
Query 714 TCTAAGA-AAGCCTGAGGG 731
||||||| || ||||||||
Sbjct 813 TCTAAGAGAA-CCTGAGGG 830
> AT4G17512.1 | Symbols: | Pseudogene of AT4G17510; UCH3; ubiquitin
thiolesterase | chr4:9769477-9770200 REVERSE LENGTH=369
Length=369
Score = 486 bits (263), Expect = 1e-136
Identities = 327/357 (92%), Gaps = 8/357 (2%)
Strand=Plus/Plus
Query 282 AGTGACAAAGTCTACTTCATGAAACAAACTGTGGATAATGCTTGTGGAACCATTGGGCTT 341
||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 7 AGTGATAAAGTTTACTTCATGAAACAAAATGTGGATAATGCTTGTGGAACCATTGGCCTT 66
Query 342 CTTCATGCTATTGGGAATATAACCTCTGAGATCAAACTCTCCGAGGGATCGTTCTTGGAT 401
||||||||||||| ||||||||||| ||||||||||||| | ||||| |||||| || ||
Sbjct 67 CTTCATGCTATTGAGAATATAACCTTTGAGATCAAACTCGCTGAGGGGTCGTTCCTGAAT 126
Query 402 AGATTCTTCAAATCCACTGCCAATATGACTTCTATAGAGCGTGCAAGGTTTCTTGAGAAT 461
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 127 AGATTCTTCAAATCCACTGCCAATATGACTCCTATAGAGCGAGCAAGGTTTCTTGAGAGC 186
Query 462 GACAGTCAAATAGAAGAT----GCTCATTCTGTAGCTGTTATAGCTGGTGATACAACGGC 517
|||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||
Sbjct 187 GACAGTCAAATAGAAGATATATGCTCATTCTTTAGCTATTATAGCTGGTGATACAACGG- 245
Query 518 TTCAGACGAGGTGGACACGCATTTCATCTGTTTGGCTTGTGTAGATGGT---GAGCTCTA 574
||||||| ||||||||||||||||||| ||||| ||||||||||||||| ||||||||
Sbjct 246 TTCAGACTAGGTGGACACGCATTTCATTTGTTTAGCTTGTGTAGATGGTAAAGAGCTCTA 305
Query 575 TGAACTTGATGGAGATAGGGCAGGGCCAGTTTCACATGGTGCTTCCTCTCCAGCTAC 631
|||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 306 TGAACTTGATGGAGATAGGGCAGGACCAGTTTCACATGGTACTTCCTCTCCAGCTAC 362
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36319288281
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5