BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946484
Length=893
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17460.1 | Symbols: HAT1 | Homeobox-leucine zipper protein 4... 1362 0.0
AT5G47370.1 | Symbols: HAT2 | Homeobox-leucine zipper protein 4... 412 2e-114
> AT4G17460.1 | Symbols: HAT1 | Homeobox-leucine zipper protein
4 (HB-4) / HD-ZIP protein | chr4:9739663-9741146 FORWARD LENGTH=1211
Length=1211
Score = 1362 bits (737), Expect = 0.0
Identities = 843/893 (94%), Gaps = 11/893 (1%)
Strand=Plus/Plus
Query 5 ACCAAGAGAGTATATCATGATGATGGGAAAAGAGGATCTGGGTTTAAGTCTTAGCTTGGG 64
||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 184 ACCAAGAGACAATATCATGATGATGGGTAAAGAGGATTTGGGTTTAAGTCTTAGCTTGGG 243
Query 65 ATTTGCACAAAACCACCATCCTCTTCAGCTAAATCTAAAACCCACTTCTTCATCAATGTC 124
|||||||| ||| |||||||||| ||||||||||| ||||||||||||||| |||||||
Sbjct 244 ATTTGCAC-AAA--ACCATCCTCTCCAGCTAAATCTTAAACCCACTTCTTCACCAATGTC 300
Query 125 CAATCTCCAGATGTTTCCATGGAACCAAACTTTTGTTTCTTCCTCAGATCATCAAAAGCA 184
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 301 CAATCTCCAGATGTTTCCATGGAACCAAACCCTTGTTTCTTCCTCAGATCAACAAAAGCA 360
Query 185 ACAGTCTCTTAGGAAAATCGACGTGAACAGCTTGCCAACGACGGTGGATTTGGAGGAGGA 244
||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 361 ACAGTTTCTTAGGAAAATCGACGTGAACAGCTTGCCAACAACGGTGGATTTGGAAGAGGA 420
Query 245 GACAGGAGTTTCATCTCCAAACAGTACGATCTCGAGCACCGTGAGCGGCAAGAGGAGGAG 304
|||||||||||| |||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 421 GACAGGAGTTTCGTCTCCAAACAGTACGATCTCGAGCACAGTGAGTGGAAAGAGGAGGAG 480
Query 305 ---TGAGAGAGAAGGAACCTCCGGTGGTGG-TGCCGGAGATGACCTCGACATCACTCTAG 360
||| |||||||| |||||||||||||| || |||||||||||| |||||||||||||
Sbjct 481 TACTGAAAGAGAAGGTACCTCCGGTGGTGGTTG-CGGAGATGACCTTGACATCACTCTAG 539
Query 361 ATAGATCTTCCTCACGTGGAACCTCCGATGAAGAAGAAGATTACGGAGGTGAGACTTGTC 420
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 540 ATAGATCTTCCTCACGTGGAACCTCCGATGAAGAGGAAGATTACGGAGGTGAGACTTGTA 599
Query 421 GGAAGAAGCTTAGGCTATCCAAAGATCAATCCGCAGTTCTCGAAGACACTTTCAAAGAGC 480
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GGAAGAAGCTTAGACTATCCAAAGATCAATCCGCAGTTCTCGAAGACACTTTCAAAGAGC 659
Query 481 ACAATACTCTCAATCCCAAACAGAAGCTGGCTTTGGCTAAGAAGCTAGGTTTAACAGCAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 ACAATACTCTCAATCCCAAACAGAAGCTGGCTTTGGCTAAGAAGCTAGGTTTAACAGCAA 719
Query 541 GACAAGTGGAAGTGTGGTTCCAAAACAGAAGAGCAAGGACAAAATTGAAGCAAACCGAAG 600
||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct 720 GACAAGTGGAAGTGTGGTTCCAAAACAGAAGAGCAAGGACAAAGTTAAAGCAGACCGAAG 779
Query 601 TGGATTGCGAGTATTTGAAGAGATGTGTAGAGAAATTAACTGAAGAGAATCGGCGGCTCG 660
||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct 780 TGGATTGCGAGTATTTGAAAAGATGTGTTGAGAAATTAACGGAAGAGAATCGGCGGCTCG 839
Query 661 AGAAAGAGGCGGCGGAATTAAGAGCATTAAAGCTTTCACCGCGGTTGTATGGTCAGATGA 720
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AGAAAGAGGCAGCGGAACTAAGAGCATTAAAGCTTTCACCGCGGTTGTATGGTCAGATGA 899
Query 721 GTCCACCAACCACTCTTTTGATGTGTCCATCGTGCGAACGAGTGGCCGGACCATCCTCAT 780
||||||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 900 GTCCACCGACCACACTTTTGATGTGTCCATCGTGTGAACGTGTGGCCGGACCATCCTCAT 959
Query 781 CTAACCACAACCAACGATCTGTCTCTTTGAGTCCATGGCTCCAAATGGCCCATGGGCCGT 840
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 960 CTAACCACAACCAGCGATCTGTCTCATTGAGTCCATGGCTCCAAATGGCCCATGGG---T 1016
Query 841 CAACCTTTGATGTGATGCGTCCTAGGTCTTAACTTTAATGCCGGTTCTATGGG 893
||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1017 CAACCTTTGATGTGATGCGTCCTAGGTCTTAACTTTAATGCTGCTTCTATGGG 1069
> AT5G47370.1 | Symbols: HAT2 | Homeobox-leucine zipper protein
4 (HB-4) / HD-ZIP protein | chr5:19216312-19217909 REVERSE
LENGTH=1284
Length=1284
Score = 412 bits (223), Expect = 2e-114
Identities = 611/790 (77%), Gaps = 59/790 (7%)
Strand=Plus/Plus
Query 20 CATGATGATGGGAAAAGAGGATCTGGGTTTAAGTCTTAGCTT-GGGATTTGCACAAAACC 78
|||||||||||| ||||| ||||| ||||| || || ||||| ||| ||| ||||||| |
Sbjct 262 CATGATGATGGGCAAAGAAGATCTAGGTTTGAGCCTAAGCTTAGGG-TTTTCACAAAATC 320
Query 79 ACCATCCTCTTCAGCTAAATCTAAAACC-CACTTCTTCATCAAT-GTCCAATCTCCAGAT 136
|| ||||||||||| | ||||| || || || ||||||| || |||||||||||
Sbjct 321 ACAATCCTCTTCAGATGAATCTGAATCCTAAC-TCTTCAT-TATCAAACAATCTCCAGA- 377
Query 137 G-TTTCCATGGAACCAAACTTTTGTTTCTTCCTCAGATCATCAAAAGCAACAGTCTCTTA 195
| | |||||||||||||| || | |||| | |||| || | ||||
Sbjct 378 GACTCCCATGGAACCAAACATTCG----ATCCT---A-CATC---AG----A---TCTTC 419
Query 196 GGAAAATCGACGTGAACAGCTTGCCAACGACGGTGGATTTG-GAGGAGGAGACAGGAGTT 254
| || || ||||||||||| || ||| | ||||| | || ||||| || |||||||||
Sbjct 420 GCAAGATAGACGTGAACAGTTTTCCATCAACGGT-TAACTGCGAGGAAGACACAGGAGTT 478
Query 255 TCATCTCCAAACAGTACGATCTCGAGCACCGTGAGCGGCAAGAGGAGGAGTGAGAGAGAA 314
|| || ||||||||||||||||| |||||| | ||||| |||| || ||||||||||||
Sbjct 479 TCGTCACCAAACAGTACGATCTCAAGCACCATTAGCGGGAAGA-GA--AGTGAGAGAGAA 535
Query 315 GGAACCTCCGG----TG-G-TGG-TGCC-G-GA-GATGACCTCGACATCACTCTAGATAG 364
|||| |||||| | | ||| | || | || ||| || ||| ||||||| ||| |
Sbjct 536 GGAATCTCCGGAACCGGCGTTGGCT-CCGGCGACGATCACGACGAGATCACTCCGGATCG 594
Query 365 ATCTTCCTCACGTGGAACCTCCGATGAAGAAGAAGATTACGGAGGTGAGACTTGTC--GG 422
| | ||||||||||||||| ||||||||||||| |||| || || || ||| ||
Sbjct 595 AGGGTACTCACGTGGAACCTCAGATGAAGAAGAAG---ACGGGGGCGAAAC--GTCGAGG 649
Query 423 AAGAAGCTTAGGCTATCCAAAGATCAATCCGCAGTTCTCGAAGACACTTTCAAAGAGCAC 482
|||||||| ||| |||| |||||||| || || |||||||||| ||||||||||| |||
Sbjct 650 AAGAAGCTCAGGTTATCAAAAGATCAGTCTGCTTTTCTCGAAGAGACTTTCAAAGAACAC 709
Query 483 AATACTCTCAATCCCAAACAGAAGCTGGCTTTGGCTAAGAAGCTAG-GTTTAACAGCAAG 541
|| ||||||||||||||||||||||| ||||||||||||||||| | || || |||||
Sbjct 710 AACACTCTCAATCCCAAACAGAAGCTAGCTTTGGCTAAGAAGCT-GAACTTGACGGCAAG 768
Query 542 ACAAGTGGAAGTGTGGTTCCAAAACAGAAGAGCAAGGACAAAATTGAAGCAAACCGAAGT 601
||||||||||||||||||||||||||||||||| || || || || |||||||| || ||
Sbjct 769 ACAAGTGGAAGTGTGGTTCCAAAACAGAAGAGCTAGAACCAAGTTAAAGCAAACGGAGGT 828
Query 602 GGATTGCGAGTATTTGAAGA-GATGTGTAGAGAAATTAACTGAAGAGAATCGGCGGCT-C 659
|||||||| || ||||| | | || |||||||| |||| |||||||| ||| | || |
Sbjct 829 AGATTGCGAATACTTGAA-ACGGTGCGTAGAGAAGCTAACGGAAGAGAACCGGAGACTTC 887
Query 660 GAGAAAGAGGCGGCGGAA-TTAAGAGCAT-TAAAGCTTTCACCGCGGTTGTATGGTCAGA 717
|||||||||| ||| || || | | | ||||| || || | || || |||||||
Sbjct 888 -AGAAAGAGGCTATGGAGCTTC-GAAC-TCTCAAGCTGTCTCCACAATTCTACGGTCAGA 944
Query 718 TGAGTCCACCAACCACTCTTTTGATGTGTCCATCGTGCGAACGAGTGGCCGGACCATCCT 777
||| ||||||||| || || | |||||||| |||||||| || |||| || ||||| |
Sbjct 945 TGACTCCACCAACTACACTCATCATGTGTCCTTCGTGCGAGCGTGTGGGTGGCCCATCAT 1004
Query 778 CATCTAACCA 787
|||| |||||
Sbjct 1005 CATCGAACCA 1014
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43603239596
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5