BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg946485 Length=530 Score E Sequences producing significant alignments: (Bits) Value AT2G37920.1 | Symbols: emb1513 | copper ion transmembrane trans... 363 1e-99 > AT2G37920.1 | Symbols: emb1513 | copper ion transmembrane transporters | chr2:15868580-15870071 REVERSE LENGTH=1398 Length=1398 Score = 363 bits (196), Expect = 1e-99 Identities = 337/397 (85%), Gaps = 41/397 (10%) Strand=Plus/Plus Query 140 ATTTGATCTATGGACTGATAGAGATGGTCCTCAATTGTTTGAGAGTGTTGATGATTTGCC 199 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 461 ATTTGATTTATGGACTGATAGAGATGGTCCTCAATTGTTTGAGAGTGTTGATGATTTGCC 520 Query 200 TTCTGCTAGGTTTTTTCCTAAAGGTGTTGTTCATAGTGTCAAACCTTATGGTAGATTATC 259 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 521 TTCTGCTAGGTTTTTTCCTAAAGGTGTTGTTCATAGTGTTAAACCTTATGGTAGATTATC 580 Query 260 ATCAACCTCTGTTGTTGATGGTGATTCTGATGGTGAAGTGAGTGAGGTAAAAGATGAAGA 319 ||| | |||||||||||||| || | |||| | | |||||||| ||||||||||| Sbjct 581 ATCTAGCTCTGTTGTTGATGATGGT---GATG---A-G--AGTGAGGTTAAAGATGAAGA 631 Query 320 AATTGGGAAGAAGCTACGTGGTCGTAGGGTGAGGAATAGATTTGGTGTCATGGGGATAGA 379 ||||||||||||| |||||||||||||||||||||| ||| |||| ||| || | Sbjct 632 AATTGGGAAGAAGTTACGTGGTCGTAGGGTGAGGAAGAGA---GGTG--ATG---AT-G- 681 Query 380 GAGAGGTGAAGAAGGAGGTAAGAGGAGGATTGAGAATCGTGTTAATGGTGGGAGATTGAG 439 ||| | | |||| ||||| | | | | | | ||||| |||||||||||||||||| Sbjct 682 GAG-G-T-AAGA-GGAGG-ACT-G-A--A---A-A-TCGTGGTAATGGTGGGAGATTGAG 727 Query 440 AAATGGAAAATCTTCT-C-----AGGTGTATGAAATGACTTTGCAGAATGGTGGGAGATA 493 ||||||| |||||| | |||||||||| |||||||||||||||| ||||||||| Sbjct 728 AAATGGAGGGTCTTCTTCTTCTCAGGTGTATGATATGACTTTGCAGAATGATGGGAGATA 787 Query 494 CGAAATTGGATCTTAGGTAAGAGTTCTTCACTTTGTT 530 |||||||||||||||||| ||||||||| |||||| Sbjct 788 TGAAATTGGATCTTAGGTATGAGTTCTTC--TTTGTT 822 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25368244235 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5