BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946485

Length=530
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G37920.1 | Symbols: emb1513 | copper ion transmembrane trans...   363    1e-99


> AT2G37920.1 | Symbols: emb1513 | copper ion transmembrane transporters 
| chr2:15868580-15870071 REVERSE LENGTH=1398
Length=1398

 Score =  363 bits (196),  Expect = 1e-99
 Identities = 337/397 (85%), Gaps = 41/397 (10%)
 Strand=Plus/Plus

Query  140  ATTTGATCTATGGACTGATAGAGATGGTCCTCAATTGTTTGAGAGTGTTGATGATTTGCC  199
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  461  ATTTGATTTATGGACTGATAGAGATGGTCCTCAATTGTTTGAGAGTGTTGATGATTTGCC  520

Query  200  TTCTGCTAGGTTTTTTCCTAAAGGTGTTGTTCATAGTGTCAAACCTTATGGTAGATTATC  259
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  521  TTCTGCTAGGTTTTTTCCTAAAGGTGTTGTTCATAGTGTTAAACCTTATGGTAGATTATC  580

Query  260  ATCAACCTCTGTTGTTGATGGTGATTCTGATGGTGAAGTGAGTGAGGTAAAAGATGAAGA  319
            ||| | |||||||||||||| || |   ||||   | |  |||||||| |||||||||||
Sbjct  581  ATCTAGCTCTGTTGTTGATGATGGT---GATG---A-G--AGTGAGGTTAAAGATGAAGA  631

Query  320  AATTGGGAAGAAGCTACGTGGTCGTAGGGTGAGGAATAGATTTGGTGTCATGGGGATAGA  379
            ||||||||||||| |||||||||||||||||||||| |||   ||||  |||   || | 
Sbjct  632  AATTGGGAAGAAGTTACGTGGTCGTAGGGTGAGGAAGAGA---GGTG--ATG---AT-G-  681

Query  380  GAGAGGTGAAGAAGGAGGTAAGAGGAGGATTGAGAATCGTGTTAATGGTGGGAGATTGAG  439
            ||| | | |||| ||||| |   | |  |   | | ||||| ||||||||||||||||||
Sbjct  682  GAG-G-T-AAGA-GGAGG-ACT-G-A--A---A-A-TCGTGGTAATGGTGGGAGATTGAG  727

Query  440  AAATGGAAAATCTTCT-C-----AGGTGTATGAAATGACTTTGCAGAATGGTGGGAGATA  493
            |||||||   |||||| |     |||||||||| |||||||||||||||| |||||||||
Sbjct  728  AAATGGAGGGTCTTCTTCTTCTCAGGTGTATGATATGACTTTGCAGAATGATGGGAGATA  787

Query  494  CGAAATTGGATCTTAGGTAAGAGTTCTTCACTTTGTT  530
             |||||||||||||||||| |||||||||  ||||||
Sbjct  788  TGAAATTGGATCTTAGGTATGAGTTCTTC--TTTGTT  822



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25368244235


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5