BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946487

Length=637
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G17430.1 | Symbols:  | O-fucosyltransferase family protein |...   433    1e-120


> AT4G17430.1 | Symbols:  | O-fucosyltransferase family protein 
| chr4:9724840-9726828 REVERSE LENGTH=1912
Length=1912

 Score =  433 bits (234),  Expect = 1e-120
 Identities = 310/344 (90%), Gaps = 15/344 (4%)
 Strand=Plus/Plus

Query  4    AGATCAAGCCCGCGTCCATGGCCGAACAGGAAGAAGCAAACCAACAAATCTGCGATATTT  63
            ||| ||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct  52   AGACCAAGCCCACGTCCATGGCCAAACAGGAAGAAGCAAACCGACAAATCTGCGATATTT  111

Query  64   GTTTGCTCCGTTTCTCTACTTGTTGTTTTCTTCGTCGTGTTCGTCTTCTTCATTACTTAC  123
             |||||||||||||| |||||||||| |||||| ||  | ||||||||||||| ||||||
Sbjct  112  CTTTGCTCCGTTTCTATACTTGTTGTGTTCTTCATC--G-TCGTCTTCTTCATCACTTAC  168

Query  124  CCCGAGATACCCAAGTCCCTCCCTGTTCTCGATCTCTGCATTTTCTGGATCCGTCCAATT  183
             ||||||| ||||||| |||   ||||||| ||||||||||||||||||||||| |||||
Sbjct  169  TCCGAGATGCCCAAGT-CCT---TGTTCTCAATCTCTGCATTTTCTGGATCCGTTCAATT  224

Query  184  --C-C----C-GATCAGAGATACTAACCCGAACTCTTCTAGGTCAGAAGTTTCTCTGGTA  235
              | |    | |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  225  CCCTCAGTGCAGATCCGAGATACTAACCCGAACTCTTCTAGGTCAGAAGTTTCTCTGGTA  284

Query  236  CGCTCCTCACTGTGGATACAGCAATCAGCTATCGGAATTTAAGAATGCGGTTCTTATGGC  295
            |||||||||| |||||| ||| ||||||||||||||||||||||||||| ||||||||||
Sbjct  285  CGCTCCTCACAGTGGATTCAGTAATCAGCTATCGGAATTTAAGAATGCGCTTCTTATGGC  344

Query  296  GGGAATTCTTAATCGGACCCTAATTTTTCCTCCGATTCTGGATC  339
            ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  345  GGGAATTCTTAATCGGACCCTAATTATTCCTCCGATTCTGGATC  388


 Score =  176 bits (95),  Expect = 2e-43
 Identities = 115/125 (92%), Gaps = 0/125 (0%)
 Strand=Plus/Plus

Query  512   AGCTGTTTGCAGCTGTGCGTCATTGAATTCTGTTGGTACTGCAGGATCTTCAATAGCTGA  571
             ||||||||| |||||||| ||| ||  || |||||||||| |||| ||| ||||||||||
Sbjct  1446  AGCTGTTTGTAGCTGTGCTTCACTGGGTTTTGTTGGTACTCCAGGGTCTACAATAGCTGA  1505

Query  572   TAGTGTGGAGATGATGAGGAAATACAATGCGTGTAGTAGTAGTTGAACTCAGACTGCATT  631
             |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1506  TAGTGTAGAGATGATGAGGAAATACAATGCGTGTAGTAGTAGTTGAACTCAGACTGCATT  1565

Query  632   TCTAT  636
             |||||
Sbjct  1566  TCTAT  1570



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30743297964


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5