BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946494
Length=753
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17390.1 | Symbols: | Ribosomal protein L23/L15e family pro... 1242 0.0
> AT4G17390.1 | Symbols: | Ribosomal protein L23/L15e family protein
| chr4:9714092-9715612 REVERSE LENGTH=997
Length=997
Score = 1242 bits (672), Expect = 0.0
Identities = 727/754 (96%), Gaps = 2/754 (0%)
Strand=Plus/Plus
Query 1 CTGCGACGCCGGAAAAACGCAATGGGTGCGTACAAGTACGTGTCGGAGCTATGGAGGAAG 60
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 47 CTGCGACGCCGGAAAATCGCAATGGGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAG 106
Query 61 AAGCAATCGGATGTGATGAGGTTTCTGCAGAGGGTTAGGTGTTGGGAGTATCGCCAGCAG 120
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 107 AAGCAGTCGGATGTGATGAGGTTTCTTCAGAGGGTTAGGTGTTGGGAGTATCGCCAGCAG 166
Query 121 CCTTCCATTGTTCGTCTTGTTCGTCCCACTCGTCCCGACAAAGCTCGTCGTCTCGGCTAC 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 167 CCTTCCATTGTTCGTCTTGTTCGTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTAC 226
Query 181 AAGGCCAAGCAGGGATTTGTTGTCTACCGTGTTCGTGTCAGACGTGGTGGTCGCAAGAGG 240
|||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 227 AAGGCCAAGCAGGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGG 286
Query 241 CCTGTTCCCAAGGGTATTGTGTATGGTAAACCCACCAACCAGGGAGTGACACAGCTCAAA 300
|| || || |||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 287 CCAGTGCCTAAGGGTATCGTGTACGGTAAACCCACCAACCAGGGAGTGACACAGCTCAAA 346
Query 301 TTCCAGCGCAGTAAGAGATCTGTTGCTGAGGAACGTGCTGGTCGCAAATTGGGTGGCCTT 360
|||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 347 TTCCAGCGTAGTAAGAGATCTGTTGCTGAGGAACGTGCTGGTCGCAAACTGGGAGGCCTT 406
Query 361 AGGGTCGTTAACTCTTACTGGCTCAATGAGGACTCTACCTACAAGTACTACGAGATTATC 420
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 AGGGTTGTTAACTCCTACTGGCTCAATGAGGACTCTACCTACAAGTACTACGAGATTATC 466
Query 421 CTAGTAGACCCTGCACACAATGCTGTCCGAAATGATCCAAGGATCAACTGGATCTGCAAC 480
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 467 CTTGTAGACCCTGCACACAATGCCGTCCGAAATGATCCAAGGATCAACTGGATCTGCAAC 526
Query 481 CCGGTGCACAAGCACAGAGAACTCAGAGGGCTCACCTCCGAAGGAAAGAAGAATCGTGGT 540
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 527 CCTGTGCACAAGCACAGAGAACTCAGAGGTCTCACCTCCGAAGGAAAGAAGAATCGTGGT 586
Query 541 CTTCGTGGAAAGGGTCACAACAACCACAAGAACAGACCTTCCCGCAGGGCAACCTGGAAG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 CTTCGTGGAAAGGGTCACAACAACCACAAGAACAGACCTTCCCGCAGGGCAACCTGGAAG 646
Query 601 AAGAACAACAGTCTCTCTCTCCGTCGTTACCGGTGATCAGTTTTATGTTTTGTTTTT-CT 659
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 647 AAGAACAACAGTATCTCTCTCCGTCGTTACCGGTGATCAGTTTTATGTTTTGTTTTTTCT 706
Query 660 CGAAGTGGTATATCTTCTGTGTGGATTTGTGTTTCGGAATTCTGGAATTACATTGGGATG 719
|||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 707 CGAACTGGTATATCTTCAGTGTGGATT-GTGTTTCGGAATTCTGGAATTACATTGGGATG 765
Query 720 GAAGACTTTCACATTCAAGAGTTTGTTTCAAGTT 753
||||||||||||||||||||||||||||||||||
Sbjct 766 GAAGACTTTCACATTCAAGAGTTTGTTTCAAGTT 799
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36570459016
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5