BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946502
Length=1748
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17300.1 | Symbols: NS1, OVA8, ATNS1 | Class II aminoacyl-tR... 2678 0.0
> AT4G17300.1 | Symbols: NS1, OVA8, ATNS1 | Class II aminoacyl-tRNA
and biotin synthetases superfamily protein | chr4:9681539-9684975
FORWARD LENGTH=1865
Length=1865
Score = 2678 bits (1450), Expect = 0.0
Identities = 1643/1737 (95%), Gaps = 9/1737 (1%)
Strand=Plus/Plus
Query 16 CGACTACAATGGCGGCCGCGTTTCTGCCGGCGACGTCTCTCCGTCTAACTCCATACTCTA 75
||| ||||||||||||| |||||||||||||||| |||||||||||||||| | ||||||
Sbjct 12 CGATTACAATGGCGGCCACGTTTCTGCCGGCGACATCTCTCCGTCTAACTCAAAACTCTA 71
Query 76 CTCTCCGCTTCTTATCATTCTTCTCCATTTCTAATCCTTCTTATTCACTCTTCCGCCCTC 135
||||||||||||||||||||||| |||||||||| ||||||||||| |||||||| ||||
Sbjct 72 CTCTCCGCTTCTTATCATTCTTCACCATTTCTAACCCTTCTTATTCTCTCTTCCGTCCTC 131
Query 136 TACGCCACCGAGTTCTCCC-GCTTATTGATGCTTTTCCGACCAATTCTCGCCGGAGATGT 194
|||||| ||| |||||||| | | | |||||||||||| |||||||||||||||||||
Sbjct 132 TACGCCGCCGTGTTCTCCCTCCCT-TCGATGCTTTTCCGGCCAATTCTCGCCGGAGATGC 190
Query 195 TTTTGCTCAGCTGTTTCCGAATCTCTCGGTTCTGGAGAGGGAAATAAAGTTGATAACTT- 253
|||||| |||||||||| ||||||||||| || || || |||||||||||||| | ||
Sbjct 191 TTTTGCACAGCTGTTTCGGAATCTCTCGGCTCCGGTGATGGAAATAAAGTTGA-GAGTTA 249
Query 254 TGAGAAGCGATTTGGAAGTAAAGTTGGAGAATTCAGGAAGAAGTTGAAGATAGCAGAAGT 313
||||| |||||||| ||||||||||||||||||||||| ||||||| |||||| |||||
Sbjct 250 CGAGAAACGATTTGGGAGTAAAGTTGGAGAATTCAGGAAAAAGTTGAGGATAGCTGAAGT 309
Query 314 GAAAGGAGGAGCAGACGAAGGGCTCG-GTCGCGTTGGGCAGAGCCTTAACATTATGGGTT 372
|||||||||||| |||||||| || | |||| || |||||||||||||||||||||||||
Sbjct 310 GAAAGGAGGAGCGGACGAAGGACT-GAGTCGGGTCGGGCAGAGCCTTAACATTATGGGTT 368
Query 373 GGGTCCGTACACTTCGGTCTCAAAGCAGTGTCACATTCATTGAGATAAATGATGGTTCAT 432
|||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 369 GGGTTCGTACACTTCGATCTCAGAGCAGTGTCACATTCATTGAGATAAATGATGGTTCAT 428
Query 433 GCTTATCGAATTTGCAATGTGTGATGAATTCGGATGCAGATGGGTATGATCAGGTAGAAT 492
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 429 GCTTATCGAATTTGCAATGTGTGATGACTTCGGATGCAGAAGGGTATGATCAGGTAGAAT 488
Query 493 CTGGTTTGATCTTGACTGGAGCATCCGTATCGGTACAAGGTACTATTGTGGCTAGCCAGG 552
|||||| |||||||||||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 489 CTGGTTCGATCTTGACTGGAGCATCAGTATCTGTACAAGGTACTATTGTAGCTAGCCAGG 548
Query 553 GAACAAAGCAAAAGGTGGAACTTAAGGTTGAGAAAATCATTGTGGTTGGAAAGTGTGACT 612
|||| |||||||| |||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 549 GAACGAAGCAAAAAGTGGAACTTAAGGTGGAGAAAATCATTGTGGTTGGAGAGTGTGACT 608
Query 613 CTTCCTATCCGATCCAGAAGAAAAGGGTCACCCGGGAATTCTTGAGAACCAAGGCTCATT 672
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 609 CTTCCTATCCGATCCAGAAGAAAAGGGTCAGCCGGGAATTCTTGAGAACCAAGGCTCATT 668
Query 673 TACGTCCAAGAACCAATACTTTTGGGGCGGTGGCGAGAGTTAGGAATACTCTGGCATATG 732
||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 669 TACGTCCTAGAACCAACACTTTTGGGGCGGTGGCAAGAGTTAGGAATACTCTGGCATATG 728
Query 733 CTACACACAAGTTCTTTCAAGAAAGTGGATTTGTCTGGGTGGCAAGCCCAATTATCACAG 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 CTACACACAAGTTCTTTCAAGAAAGTGGATTTGTCTGGGTGGCAAGCCCAATTATCACAG 788
Query 793 CGTCGGATTGTGAAGGAGCTGGAGAACAGTTCTGTGTCACTACACTTATTCCCAGCTCCC 852
| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 789 CTTCGGATTGTGAAGGAGCAGGAGAACAGTTCTGTGTCACTACACTTATTCCTAGCTCCC 848
Query 853 ATGAGAACACCGATACTTCCATTGATGCAATTCCGAAAACAAAGGGAGGGTTAATTGATT 912
|||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 849 ATGAGAACACCGATACTTCCATTGATGCGATTCCGAAAACAAAGGGAGGGTTGATCGATT 908
Query 913 GGTCTCAGGACTTCTTTGGGAAACCAGCATTCTTAACAGTCTCTGGGCAACTCAATGGAG 972
||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 909 GGTCTCAGGACTTTTTTGGGAAACCAGCATTCTTAACCGTCTCTGGGCAACTTAATGGAG 968
Query 973 AAACTTATGCAACCGCTCTCTCAGATGTATACACATTTGGTCCAACATTTCGAGCTGAGA 1032
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 969 AAACTTATGCAACCGCTCTCTCAGATGTATACACATTTGGTCCTACATTTCGAGCTGAGA 1028
Query 1033 ATTCCAACACGTCCAGGCACTTAGCCGAATTCTGGATGATTGAACCAGAACTTGCTTTTG 1092
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1029 ATTCCAACACGTCAAGGCACTTAGCCGAATTCTGGATGATTGAACCAGAACTTGCTTTTG 1088
Query 1093 CCGACCTGGACGATGACATGGCCTGTGCCACCGCCTACCTCCAGTACGTAGTAAAATACG 1152
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1089 CCGACCTGGATGATGACATGGCCTGTGCCACTGCCTACCTCCAGTACGTAGTAAAGTACG 1148
Query 1153 TTCTTGACAATTGCAAGGAAGACATGGAGTTTTTTGATACATGGATTGAGAAAGGAATTA 1212
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1149 TTCTTGATAATTGCAAGGAAGACATGGAGTTTTTCGATACATGGATTGAGAAAGGAATCA 1208
Query 1213 TTCGTCGCTTGAGCGACGTAGCTGAGAAAGAGTTTCTACAGCTGGCTTACACAGACGCCA 1272
|||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1209 TTCGCCGCTTGAGTGACGTAGCTGAGAAAGAGTTTCTACAGCTGGGGTACACAGACGCCA 1268
Query 1273 TTGAAGTTCTTCTGAAAGCAAACAGAAAATTTGATTTTCCGGTGAAGTGGGGGTTGGATC 1332
||||| |||||||||||||||||| |||||| ||||||||||||||||||||| ||||||
Sbjct 1269 TTGAAATTCTTCTGAAAGCAAACAAAAAATTCGATTTTCCGGTGAAGTGGGGGCTGGATC 1328
Query 1333 TGCAGAGTGAGCATGAAAGGTACATAACAGAAGAGGCATTTGGGGGTCGCCCTGTGATAA 1392
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1329 TGCAGAGTGAGCATGAAAGGTACATAACAGAAGAGGCTTTTGGGGGTCGACCTGTGATAA 1388
Query 1393 TAAGAGACTATCCGAAGGAGATAAAAGCATTCTATATGCGAGAGAACGATGATGGAAAGA 1452
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 1389 TAAGAGACTATCCGAAGGAGATCAAAGCATTCTATATGCGGGAGAACGATGATGGGAAGA 1448
Query 1453 CAGTGGCAGCAATGGATATGCTCGTGCCTCGGATAGGAGAGCTGATAGGTGGAAGCCAAA 1512
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1449 CAGTGGCAGCAATGGATATGCTTGTGCCTCGGATAGGAGAGCTGATAGGTGGAAGCCAAA 1508
Query 1513 GAGAGGAAAGGCTTGAGGTGTTGGAAGCGAGGCTTGATGAGTTGAAACTCAACAAAGAGA 1572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1509 GAGAGGAAAGGCTTGAGGTGTTGGAAGCGAGGCTTGATGAGTTGAAACTCAACAAAGAGA 1568
Query 1573 GCTACTGGTGGTACCTCGACCTTCGCCGCTATGGTTCAGTTCCTCATGCAGGATTTGGAC 1632
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1569 GCTACTGGTGGTACCTCGACCTCCGCCGCTATGGTTCAGTTCCTCATGCAGGATTTGGAC 1628
Query 1633 TAGGGTTTGAGAGGCTGGTCCAATTTGTCACCGGAATTGATAATATCAGAGACGTTATTC 1692
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 TAGGGTTTGAGAGACTGGTCCAATTTGTCACCGGAATTGATAATATCAGAGACGTTATTC 1688
Query 1693 CTTTCCCGCGCACACCTGCCTCTGCTGAATTCTGATACTCGACTCCCC-CAT-GCTC 1747
||||||||||||||||||||||||||||||||||||||||||| || | ||| ||||
Sbjct 1689 CTTTCCCGCGCACACCTGCCTCTGCTGAATTCTGATACTCGAC-CCTCTCATTGCTC 1744
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86445338490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5