BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946507

Length=548
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G17245.1 | Symbols:  | RING/U-box superfamily protein | chr4...   872    0.0  


> AT4G17245.1 | Symbols:  | RING/U-box superfamily protein | chr4:9669365-9670005 
FORWARD LENGTH=641
Length=641

 Score =  872 bits (472),  Expect = 0.0
 Identities = 512/532 (96%), Gaps = 0/532 (0%)
 Strand=Plus/Plus

Query  10   GAACTTGTCTGAGTTCCAATGCGGCTGCTGCTATCGTCTGATCCTCAACCCGCACTTACG  69
            ||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||
Sbjct  1    GAACTTGTCTGAGTTCCAATGCGGCTGCTGCTATCATCTGATCCCCAACCCGAACTTACG  60

Query  70   TCTACATGTACCTCTCAGAGTTGCGGATGGAAGCCTTATTCTCATTCCAATGACTTTGCT  129
            ||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct  61   TCTACATGTACCTCTCATAGTTGCGGCTGGAAGCCTTACTCTCATTCCAATGACTTTGCT  120

Query  130  GCCAACGCGTTCCTCCTTCTCATTATCCTTTTCTGTTCTTTCATATGCGTCCTCTCTCTC  189
            ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct  121  GCCAACGCGTTCCTCCTTCTCATCATCCTCTTCTGTTCTTTCATATGCGTCCTCTCTCTC  180

Query  190  CACGCTGCCATCCGTTGTTGCCTCCGTCCAGTCCTCCAACATGTCCCTAAGACCGACCCG  249
            |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  181  CACGCTGCTATCCGTTGTTGCCTCCGTCCAGTCCTCCAACATGTCCCTAAGCCCGACCCG  240

Query  250  GACCTTGAGGCCACCCATCCCGACCCTCCCCCGACACTTGTCTACTCCCCGGGACTAAAC  309
            |||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||
Sbjct  241  GACCTTGAGGCCACCCATCCAGACGCTCCCCCGACACTTGTCTACTCCCCGGGCCTAAAC  300

Query  310  CTAGCAGGCAATGAAGCCGAGTGCATCATTTGTTTGTCTGAATTCCAAGACGGTGACACC  369
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  CTAGCAGGCAATGAAGCAGAGTGCATCATTTGTTTGTCTGAATTCCAAGACGGTGACACC  360

Query  370  CTACGCGTGTTGGAGAGATGCAAACATGGATTCCACGTTCATTGCATCCAGAAGTGGCTC  429
             |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  361  TTACGCGTGTTGGAGAGATGCAAACATGGATTCCACGTTTATTGCATCCAGAAGTGGCTC  420

Query  430  TCCTCCTCCCACTCTTCTTGTCCCACTTGCCGGACAAACATCTTCTCCTCCCCACCTCAA  489
            ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  TCCTCATCCCATTCTTCTTGTCCCACTTGCCGGACAAACATCTTCTCCTCCCCACCTCAA  480

Query  490  CTTCACTCACAAAGCTTACCACTAACGAGTACATCTTAGTCATATGGTAGCT  541
            ||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct  481  CTTCACTCACAAAGCTTACCACTAACGAGTACACCTTAGTCAGATGGTAGCT  532



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26272458881


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5