BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946508
Length=1072
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17240.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1611 0.0
> AT4G17240.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures;
EXPRESSED DURING: 8 growth stages; Has 1142 Blast hits
to 1055 proteins in 252 species: Archae - 22; Bacteria - 318;
Metazoa - 248; Fungi - 96; Plants - 59; Viruses - 3; Other
Eukaryotes - 396 (source: NCBI BLink). | chr4:9666691-9668374
REVERSE LENGTH=1222
Length=1222
Score = 1611 bits (872), Expect = 0.0
Identities = 1008/1073 (94%), Gaps = 11/1073 (1%)
Strand=Plus/Plus
Query 7 GAACGTTCCATCGAA-AATGGCATCTCGCTACAATTCCTACGATTCTAGATCATCAGTAA 65
|||| ||||||| || |||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 67 GAACCTTCCATC-AATAATGGCGTCTCGCTACAATTCCTACGATTCTAGATCATCCGTAA 125
Query 66 CCTCCTCGATTCACTCAGATCTATCTTCCTCCGCCGAATTCAAATCGAACAAGCCAGTTT 125
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||
Sbjct 126 CCTCCTCGATTCACTCAGATCTATCATCCTCCGCAGAATTCAAATCGAACAAGCCAATTT 185
Query 126 CATCCAAAGCCATTGTCAGATCCAAATCTTCCTACTTGACCAAAACAACGAAACCCGTAA 185
|||| |||||||||||||||||||||||||||||||| |||||||||||||| ||| |||
Sbjct 186 CATCGAAAGCCATTGTCAGATCCAAATCTTCCTACTTAACCAAAACAACGAAGCCCATAA 245
Query 186 ATCCTGATAATAATCCTGGAAACCTCACTTATATGATGAAGAAGCTGATGGAGATGAAGA 245
| ||||||| ||||||||||||||||||| |||||||||||||||| ||||| |||||||
Sbjct 246 AGCCTGATAGTAATCCTGGAAACCTCACTAATATGATGAAGAAGCTAATGGAAATGAAGA 305
Query 246 AATCTAATTCCAAGAGCAAGAGGGTCGAGCTTGTGATTCCCGAGGAACTGAAGAAAATTG 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 AATCTAATTCCAAGAGCAAGAGGGTCGAGCTTGTGATTCCCGAGGAACTGAAGAAAATTG 365
Query 306 ATACTGGTAAAGGAGGA---AAGAGCACATTGGGAACATTGCAGAGGAAGCTATTCGGGA 362
||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 366 ATACTGGCAAAGGAGGAGGGAAGAGTACATTGGGAACATTGCAGAGGAAGCTATTCGGGA 425
Query 363 AGGAGAAGGTGAAGCCATTGACAGAGGTTAAGGGTAACACTAGGACATTGTCTATGGTTC 422
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 426 AGGAGAAGGTGAAGGCATTGACAGAGGTTAAGAGTAACACTAGGACATTGTCTATGGTTC 485
Query 423 TACGAAGCGAGAGGGAGCTTCTGAGCATGAACAAGGACCAGGAGGTTGAAATCGCTGAGC 482
| |||||||| |||||||||||| | |||||||||||||||||||||||||| |||||||
Sbjct 486 TGCGAAGCGAAAGGGAGCTTCTGGGGATGAACAAGGACCAGGAGGTTGAAATAGCTGAGC 545
Query 483 TAAAGTTGCAGCTTGAAGATAAGAACCGAGAAGTGGAGAAGTTGAAGGATCTGTGCCTGA 542
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 546 TAAAGTTTCAGCTTGAAGAGAAGAACCGAGAAGTGGAGAAGTTGAAGGATCTGTGTCTGA 605
Query 543 AGCAAAGGGAGGAGATAAAGTCACTGAAGAGTGCAGTTCTGTTTCCGGATGCGATGAATA 602
|||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 606 AGCAAAGGGAAGAGATAAAGTCACTGAAGAGTGCGGTTCTGTTTCCGGATTCGATGAATA 665
Query 603 GCCAAATTAGCCAAATGCAGGAGCTGAATCAGGCAAG-GCAGATCATCCCTAACCTTCAA 661
| ||||| | ||||||||||||||||||||||| || | |||| || ||||| ||||||
Sbjct 666 GTCAAATCAATCAAATGCAGGAGCTGAATCAGGCGAGAG-AGATTATACCTAATCTTCAA 724
Query 662 AAGCAGGTCATTTCACTCAATGGCCAGCTTCAATGCATTGCTCAAGACCTTGCTGAGGTG 721
||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 725 AAGCAGGTCATTTCACTTAATGGACAGCTCCAATGCATTGCTCAAGACCTTGCTGAGGTG 784
Query 722 AAGGCGAACAAGTACTTGTCAGAAAGCTGTTATTGGCAAGCACAGACTTCTTCCTATGAT 781
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 785 AAAGCGAACAAGTACTTGTCAGAAAGCTGTTACTGGCAAGCACAGACTTCTTCCTATGAT 844
Query 782 TCACTGGAATTCAGCTCAGGTAGCCCTGATGGATTAGCTCTGGAAGATCTGAATCCATGC 841
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 845 TCACTGGAATTCAGCTCAGGTAGCCCTGATGGATTGGCTCTGGAAGATTTGAATCCATGC 904
Query 842 CTAACCCCTTATACCAAGAAGAAGCCCAAGGAGTATGAGAGGGTGGATTCAGCAGAAGAG 901
||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 905 CTAACTCCTTATACCAAGAAGAAGCCCAAGGAGTATGAGAGGGTTGACTCAGCAGAAGAG 964
Query 902 AGCTTATCAGGGAGAAGCACTATAACAACAACAGGAGGTAAAGTCAAATCGAGTTCGAA- 960
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 965 AGTTTATCAGGGAGAAGCACTATAACAACAACAGGCGGTAAAGTCAAATCGAGTTC-AAG 1023
Query 961 AAGTGTAAAGATGTCAAGGAGCTCGGAGGGAAAGGCAGGGCGGAGATCAGAGGAGAGCAA 1020
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 1024 AAGTGTAAAGATGTCAAGGAGCTCAGAGGGAAAGGCAGGGCAGAGATCAGAGGAGAGCAA 1083
Query 1021 AGGATGGTATAGGGGTGGGAGAATGTTTTAAGGT-AAAGAAAAGAAAATGCCT 1072
|||||||||||| |||||||| |||||||||||| ||| ||||||||||||||
Sbjct 1084 AGGATGGTATAGAGGTGGGAGGATGTTTTAAGGTGAAA-AAAAGAAAATGCCT 1135
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52509770070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5