BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946510
Length=1573
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17220.1 | Symbols: ATMAP70-5, MAP70-5 | microtubule-associa... 2375 0.0
> AT4G17220.1 | Symbols: ATMAP70-5, MAP70-5 | microtubule-associated
proteins 70-5 | chr4:9656838-9659463 REVERSE LENGTH=1770
Length=1770
Score = 2375 bits (1286), Expect = 0.0
Identities = 1487/1584 (94%), Gaps = 13/1584 (1%)
Strand=Plus/Plus
Query 1 GGAGCCGTTGAGACTACAAAATGACTGCAGAAGAAAACCCTTTTGTATCTGACACCTCTT 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 39 GGAGCCGTTGAGACTACAAAATGACTGCAGCAGAAAACCCTTTTGTATCTGACACCTCTT 98
Query 61 CTCTGCAAAACCAGCTTATAGAAAAAGAGAAAGAGCTTTTGACTGCTAAAGCTGAAATTG 120
||||||||| |||||||| |||||||||||||||||||||| |||||||||||||| |||
Sbjct 99 CTCTGCAAAGCCAGCTTAAAGAAAAAGAGAAAGAGCTTTTGGCTGCTAAAGCTGAAGTTG 158
Query 121 AGGCTTTGAGAACAAATGAAGGGCACAAAGACAGAGCCTTTAAGGAGCTTAGAGAAAACG 180
||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 159 AGGCTTTGAGAACAAATGAAGAGCTCAAAGACAGAGTCTTTAAGGAGCTTAGAGAAAACG 218
Query 181 TGAGGAAGTTGGAGGAGCAACTTGGAGCCACCGAGAAT-ATTGTTGACCAAAAGGAGGTG 239
||||||||||||||||| |||||||||||||||||||| | ||||||||||||||| ||
Sbjct 219 TGAGGAAGTTGGAGGAGAAACTTGGAGCCACCGAGAATCA-AGTTGACCAAAAGGAGTTG 277
Query 240 GAGATGAAGAAGCTGGAAGAAGAGAAGGAAGATGCATTGGCGGCACAGGACGCTGCAGAA 299
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 GAGAGGAAGAAGCTAGAAGAAGAGAAGGAAGATGCATTGGCGGCACAGGACGCTGCAGAA 337
Query 300 GAAGCACTAAGGAGGGTTTACACTCACCAACAGGATGATGACTCTCTTCCCCTTGAATCC 359
||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 338 GAAGCACTAAGGAGGGTTTACACTCACCAACAGGACGATGACTCTCTACCCCTAGAATCC 397
Query 360 ATTATAGCTCCTCTTGAAGCTCAGATCAAGTTTCAAAAGCATGAGATTTCTGCACTTCAA 419
|| ||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||
Sbjct 398 ATCATAGCTCCTCTTGAATCTCAGATCAAGATTCACAAGCATGAGATTTCTGCACTTCAA 457
Query 420 GAGGACAAGAAAGCGTTGGAACGTCTGACAAAATCAAAAGAATCGGCGCTTCTTGAAGCA 479
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 458 GAGGACAAGAAAGCGTTGGAACGTCTAACAAAATCAAAAGAATCGGCGCTTCTTGAAGCA 517
Query 480 GAGAGAATCTTGAGAAGTGCCCTTGAACGGGCTTTGATCGTTGAAGAGGTCCAGAACCAC 539
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 518 GAGAGAATCTTGAGAAGTGCCCTTGAACGTGCTTTGATTGTTGAAGAGGTCCAGAACCAT 577
Query 540 AACTTTGAACTTCGACGACAGATTGAGATATGCCAGGATGAGAACAAGTTTCTTGAGAAA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 578 AACTTTGAACTTCGACGACAGATTGAGATATGCCAGGATGAGAACAAGTTTCTTGAGAAA 637
Query 600 ATCAACCGCCAGAAAGTGTTGGAGATCGAGAAGCTCTCCCAAAGCATTGTAGAATTGGAG 659
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 638 ATTAACCGCCAGAAAGTGTTGGAGATTGAGAAGCTCTCCCAAAGCATTGTAGAACTGGAG 697
Query 660 GAAGCAATCTTGGCAGGAGGAACAGCCGCCAATGCAGTTCGAGACTATCGCCGCCAAATC 719
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 GAAGCGATCTTGGCAGGAGGAACAGCCGCCAATGCAGTTCGAGACTATCGCCGCCAAATC 757
Query 720 TCACAGCTCAATGAAGAGAAGAGGACCTTGGAGAGAGAGCTAGCCAGAGTCAAAGTATCA 779
|| ||||||||||| |||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 758 TCCCAGCTCAATGATGAGAAGAGAACCTTAGAGAGAGAGCTAGCCAGAGTCAAAGTGTCA 817
Query 780 GCAAGTAGAGTTGCCCTTGCCGTTGCTAACGAGTGGAAAGATGAGAACGATAGAGTCATG 839
||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 818 GCAAGTAGAGTGGCACTTGCAGTTGCTAACGAGTGGAAAGATGAGAACGATAGAGTCATG 877
Query 840 CCCGTAAAGCAATGGCTTGAAGAAAGAAGGATTCTCCATGGAGAAATGCAGAAATTGAAA 899
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 878 CCTGTAAAGCAATGGCTTGAAGAGAGAAGGATTCTCCATGGAGAAATGCAGAAATTGAAA 937
Query 900 GATAAACTCTCTGTTTCCGAGAGAACCGCTAAGGCTGAATCTCAGCTAAAGGAGAGGTTG 959
||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 938 GATAAACTCGCTGTTTCCGAGAGAACCGCTAAGGCTGAGTCCCAGCTAAAGGAGAGGTTA 997
Query 960 AAGCTGAGGCTGAAAACCATAGAAGATGGTTTAAAGGGCCCAAACACGTGTAAAGTCTCT 1019
||||| ||||||||||||||||||||||| || |||||||||||||||| | ||||||
Sbjct 998 AAGCTTAGGCTGAAAACCATAGAAGATGGCTTGAAGGGCCCAAACACGTTTTTCGTCTCT 1057
Query 1020 CCAACTACAAAGACTGAAAAACCTGGCAAGATTTTAGGATTCTTGACGAGTGGTGGTGGA 1079
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 1058 CCAACTACAAAGACTGAAAAATCTGGCAAGATTTTAGGATTCTTGACCAGTGGTGGTGGC 1117
Query 1080 TCAAAGAAAAGGTCTACTTC--AG----G---CTCAATTACTGGCAGAATCCATGCCCTG 1130
|||||||||||||||| ||| || | |||| |||| |||||||||||||| ||
Sbjct 1118 TCAAAGAAAAGGTCTAGTTCTCAGCTAAGAGGCTCAGTTACAGGCAGAATCCATGCTATG 1177
Query 1131 AATCAGCCGATTCACATAGTTGCAGAAAGTGATGAAAAGGAGAATTCAAAGATAACCGCA 1190
|||||||| ||| ||| ||||| ||||||||||||| ||||||||||||||| || |||
Sbjct 1178 AATCAGCCAATTGACAGAGTTGGGGAAAGTGATGAAATGGAGAATTCAAAGATTACTGCA 1237
Query 1191 AACG-ATATAACTGATCAGCATGAAGAAGATGGCAAAAGGAAAGCAGAGGAAGATAGAAA 1249
|||| || | |||||||| |||||||||||| || |||||||| ||||||||||| ||||
Sbjct 1238 AACGGAT-TGACTGATCAACATGAAGAAGATAGCGAAAGGAAAACAGAGGAAGATGGAAA 1296
Query 1250 TGTAGATTCTGAAGATATGGTTTCAGGGTTTTTATATGACAGGCTTCAGAAGGAAGTAAT 1309
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1297 TGTTTATTCTGAAGATATGGTTTCAGGGTTTTTATATGACAGGCTTCAGAAGGAAGTGAT 1356
Query 1310 TGCTTTAAGGAAGATTTGTGAGAGTAAAGAGGGTACTATTAATGCCAAAAATGAAGAAAT 1369
||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1357 TGCTTTAAGGAAGCTATGTGAGAGTAAAGAGGGTACTATAAATGCCAAAAATGAAGAAAT 1416
Query 1370 CAAGATGTTGTTGAAGAAAGTGGATGCTCTAACGAAAGCCATTGAAGTGGAGACAAAGAA 1429
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1417 CAAGATGTTGTTGAAGAAGGTGGATGCTCTAACGAAAGCCATTGAAGTTGAGACAAAGAA 1476
Query 1430 GGCGAAGAGGGAAGCCGCAGCGAGAGAAAAGGAAAACGCATTGGCAGTGTTGAATGAAGA 1489
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1477 GGCAAAGAGGGAAGCCGCAGCGAGAGAAAAGGAAAACGCATTGGCAATGTTGAATGAAGA 1536
Query 1490 GTCAAAACAATGTAGAAAGGCAAAACTACCGAGAAGCCGCGTACCTAATCCACGTTGCCA 1549
|||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1537 GTCAAAACTATGTAGAAAGGCAAAACTACCGAGAAGCCGCATACCCAATCCACGTTGCCA 1596
Query 1550 GTAGAGGAAGAAGAAGCTTATGGG 1573
||||||||||||||||||||||||
Sbjct 1597 GTAGAGGAAGAAGAAGCTTATGGG 1620
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77660243115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5