BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg946510 Length=1573 Score E Sequences producing significant alignments: (Bits) Value AT4G17220.1 | Symbols: ATMAP70-5, MAP70-5 | microtubule-associa... 2375 0.0 > AT4G17220.1 | Symbols: ATMAP70-5, MAP70-5 | microtubule-associated proteins 70-5 | chr4:9656838-9659463 REVERSE LENGTH=1770 Length=1770 Score = 2375 bits (1286), Expect = 0.0 Identities = 1487/1584 (94%), Gaps = 13/1584 (1%) Strand=Plus/Plus Query 1 GGAGCCGTTGAGACTACAAAATGACTGCAGAAGAAAACCCTTTTGTATCTGACACCTCTT 60 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 39 GGAGCCGTTGAGACTACAAAATGACTGCAGCAGAAAACCCTTTTGTATCTGACACCTCTT 98 Query 61 CTCTGCAAAACCAGCTTATAGAAAAAGAGAAAGAGCTTTTGACTGCTAAAGCTGAAATTG 120 ||||||||| |||||||| |||||||||||||||||||||| |||||||||||||| ||| Sbjct 99 CTCTGCAAAGCCAGCTTAAAGAAAAAGAGAAAGAGCTTTTGGCTGCTAAAGCTGAAGTTG 158 Query 121 AGGCTTTGAGAACAAATGAAGGGCACAAAGACAGAGCCTTTAAGGAGCTTAGAGAAAACG 180 ||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| Sbjct 159 AGGCTTTGAGAACAAATGAAGAGCTCAAAGACAGAGTCTTTAAGGAGCTTAGAGAAAACG 218 Query 181 TGAGGAAGTTGGAGGAGCAACTTGGAGCCACCGAGAAT-ATTGTTGACCAAAAGGAGGTG 239 ||||||||||||||||| |||||||||||||||||||| | ||||||||||||||| || Sbjct 219 TGAGGAAGTTGGAGGAGAAACTTGGAGCCACCGAGAATCA-AGTTGACCAAAAGGAGTTG 277 Query 240 GAGATGAAGAAGCTGGAAGAAGAGAAGGAAGATGCATTGGCGGCACAGGACGCTGCAGAA 299 |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 278 GAGAGGAAGAAGCTAGAAGAAGAGAAGGAAGATGCATTGGCGGCACAGGACGCTGCAGAA 337 Query 300 GAAGCACTAAGGAGGGTTTACACTCACCAACAGGATGATGACTCTCTTCCCCTTGAATCC 359 ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||| Sbjct 338 GAAGCACTAAGGAGGGTTTACACTCACCAACAGGACGATGACTCTCTACCCCTAGAATCC 397 Query 360 ATTATAGCTCCTCTTGAAGCTCAGATCAAGTTTCAAAAGCATGAGATTTCTGCACTTCAA 419 || ||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||| Sbjct 398 ATCATAGCTCCTCTTGAATCTCAGATCAAGATTCACAAGCATGAGATTTCTGCACTTCAA 457 Query 420 GAGGACAAGAAAGCGTTGGAACGTCTGACAAAATCAAAAGAATCGGCGCTTCTTGAAGCA 479 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 458 GAGGACAAGAAAGCGTTGGAACGTCTAACAAAATCAAAAGAATCGGCGCTTCTTGAAGCA 517 Query 480 GAGAGAATCTTGAGAAGTGCCCTTGAACGGGCTTTGATCGTTGAAGAGGTCCAGAACCAC 539 ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 518 GAGAGAATCTTGAGAAGTGCCCTTGAACGTGCTTTGATTGTTGAAGAGGTCCAGAACCAT 577 Query 540 AACTTTGAACTTCGACGACAGATTGAGATATGCCAGGATGAGAACAAGTTTCTTGAGAAA 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 578 AACTTTGAACTTCGACGACAGATTGAGATATGCCAGGATGAGAACAAGTTTCTTGAGAAA 637 Query 600 ATCAACCGCCAGAAAGTGTTGGAGATCGAGAAGCTCTCCCAAAGCATTGTAGAATTGGAG 659 || ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct 638 ATTAACCGCCAGAAAGTGTTGGAGATTGAGAAGCTCTCCCAAAGCATTGTAGAACTGGAG 697 Query 660 GAAGCAATCTTGGCAGGAGGAACAGCCGCCAATGCAGTTCGAGACTATCGCCGCCAAATC 719 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 698 GAAGCGATCTTGGCAGGAGGAACAGCCGCCAATGCAGTTCGAGACTATCGCCGCCAAATC 757 Query 720 TCACAGCTCAATGAAGAGAAGAGGACCTTGGAGAGAGAGCTAGCCAGAGTCAAAGTATCA 779 || ||||||||||| |||||||| ||||| |||||||||||||||||||||||||| ||| Sbjct 758 TCCCAGCTCAATGATGAGAAGAGAACCTTAGAGAGAGAGCTAGCCAGAGTCAAAGTGTCA 817 Query 780 GCAAGTAGAGTTGCCCTTGCCGTTGCTAACGAGTGGAAAGATGAGAACGATAGAGTCATG 839 ||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 818 GCAAGTAGAGTGGCACTTGCAGTTGCTAACGAGTGGAAAGATGAGAACGATAGAGTCATG 877 Query 840 CCCGTAAAGCAATGGCTTGAAGAAAGAAGGATTCTCCATGGAGAAATGCAGAAATTGAAA 899 || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 878 CCTGTAAAGCAATGGCTTGAAGAGAGAAGGATTCTCCATGGAGAAATGCAGAAATTGAAA 937 Query 900 GATAAACTCTCTGTTTCCGAGAGAACCGCTAAGGCTGAATCTCAGCTAAAGGAGAGGTTG 959 ||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 938 GATAAACTCGCTGTTTCCGAGAGAACCGCTAAGGCTGAGTCCCAGCTAAAGGAGAGGTTA 997 Query 960 AAGCTGAGGCTGAAAACCATAGAAGATGGTTTAAAGGGCCCAAACACGTGTAAAGTCTCT 1019 ||||| ||||||||||||||||||||||| || |||||||||||||||| | |||||| Sbjct 998 AAGCTTAGGCTGAAAACCATAGAAGATGGCTTGAAGGGCCCAAACACGTTTTTCGTCTCT 1057 Query 1020 CCAACTACAAAGACTGAAAAACCTGGCAAGATTTTAGGATTCTTGACGAGTGGTGGTGGA 1079 ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| Sbjct 1058 CCAACTACAAAGACTGAAAAATCTGGCAAGATTTTAGGATTCTTGACCAGTGGTGGTGGC 1117 Query 1080 TCAAAGAAAAGGTCTACTTC--AG----G---CTCAATTACTGGCAGAATCCATGCCCTG 1130 |||||||||||||||| ||| || | |||| |||| |||||||||||||| || Sbjct 1118 TCAAAGAAAAGGTCTAGTTCTCAGCTAAGAGGCTCAGTTACAGGCAGAATCCATGCTATG 1177 Query 1131 AATCAGCCGATTCACATAGTTGCAGAAAGTGATGAAAAGGAGAATTCAAAGATAACCGCA 1190 |||||||| ||| ||| ||||| ||||||||||||| ||||||||||||||| || ||| Sbjct 1178 AATCAGCCAATTGACAGAGTTGGGGAAAGTGATGAAATGGAGAATTCAAAGATTACTGCA 1237 Query 1191 AACG-ATATAACTGATCAGCATGAAGAAGATGGCAAAAGGAAAGCAGAGGAAGATAGAAA 1249 |||| || | |||||||| |||||||||||| || |||||||| ||||||||||| |||| Sbjct 1238 AACGGAT-TGACTGATCAACATGAAGAAGATAGCGAAAGGAAAACAGAGGAAGATGGAAA 1296 Query 1250 TGTAGATTCTGAAGATATGGTTTCAGGGTTTTTATATGACAGGCTTCAGAAGGAAGTAAT 1309 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1297 TGTTTATTCTGAAGATATGGTTTCAGGGTTTTTATATGACAGGCTTCAGAAGGAAGTGAT 1356 Query 1310 TGCTTTAAGGAAGATTTGTGAGAGTAAAGAGGGTACTATTAATGCCAAAAATGAAGAAAT 1369 ||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1357 TGCTTTAAGGAAGCTATGTGAGAGTAAAGAGGGTACTATAAATGCCAAAAATGAAGAAAT 1416 Query 1370 CAAGATGTTGTTGAAGAAAGTGGATGCTCTAACGAAAGCCATTGAAGTGGAGACAAAGAA 1429 |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 1417 CAAGATGTTGTTGAAGAAGGTGGATGCTCTAACGAAAGCCATTGAAGTTGAGACAAAGAA 1476 Query 1430 GGCGAAGAGGGAAGCCGCAGCGAGAGAAAAGGAAAACGCATTGGCAGTGTTGAATGAAGA 1489 ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1477 GGCAAAGAGGGAAGCCGCAGCGAGAGAAAAGGAAAACGCATTGGCAATGTTGAATGAAGA 1536 Query 1490 GTCAAAACAATGTAGAAAGGCAAAACTACCGAGAAGCCGCGTACCTAATCCACGTTGCCA 1549 |||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 1537 GTCAAAACTATGTAGAAAGGCAAAACTACCGAGAAGCCGCATACCCAATCCACGTTGCCA 1596 Query 1550 GTAGAGGAAGAAGAAGCTTATGGG 1573 |||||||||||||||||||||||| Sbjct 1597 GTAGAGGAAGAAGAAGCTTATGGG 1620 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77660243115 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5