BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg946515 Length=467 Score E Sequences producing significant alignments: (Bits) Value AT4G17200.1 | Symbols: | F-box and associated interaction doma... 453 7e-127 AT3G15935.1 | Symbols: | pseudogene, hypothetical protein | ch... 220 7e-57 > AT4G17200.1 | Symbols: | F-box and associated interaction domains-containing protein | chr4:9651108-9652253 FORWARD LENGTH=1146 Length=1146 Score = 453 bits (245), Expect = 7e-127 Identities = 296/320 (93%), Gaps = 6/320 (2%) Strand=Plus/Plus Query 14 AAGGAAGCAGTTCATGGGATTCATGATGATGGATTCTAGGGTTTGTTCAATGAATTTTGA 73 |||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||| Sbjct 141 AAGGAAGCAGTTTATGGGATTCACGATGATGGATTCTAGGGTTTGTTCAATGAAGTTTGA 200 Query 74 TCTCCAAGGAATCC-ATAACAACGAAGAAGACTTTGTTGATCCATGTATAAAGCAAATTG 132 |||||||||||||| | ||||||||| | ||||||||||||||||||||||||||||||| Sbjct 201 TCTCCAAGGAATCCGA-AACAACGAACATGACTTTGTTGATCCATGTATAAAGCAAATTG 259 Query 133 CTAAACTTGATCAAATCGAGATATCTAAAGTCCTTCAATGCGATGGTTTCTTGTTATGCG 192 |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| Sbjct 260 CTAAACTTGATCAAATCGAGGTATCTAAAGTCCTTCAATGCGATGGTTTGTTGTTATGCG 319 Query 193 TCATTAAGGACAACTCGAGGCTTTTAGTGTGGAATCCTTATTTAGGGCAAACAAGGTTTA 252 || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 320 TCGGTAAGGACAACTCGAGGCTTCTAGTGTGGAATCCTTATTTAGGGCAAACAAGGTTTA 379 Query 253 TCAAACCAAGAAACAG-TTTCCACAGATTAGACA-GGTATGCTCTCGGATACGACAGTAA 310 ||||||||||||| || ||| ||| | | || | |||| ||||||||||| |||| ||| Sbjct 380 TCAAACCAAGAAAAAGGTTTA-ACAAACTCGA-ATGGTACGCTCTCGGATATGACAATAA 437 Query 311 CCACAACTACAAAATCTTGA 330 |||||||||||||||||||| Sbjct 438 CCACAACTACAAAATCTTGA 457 > AT3G15935.1 | Symbols: | pseudogene, hypothetical protein | chr3:5390599-5391763 REVERSE LENGTH=1165 Length=1165 Score = 220 bits (119), Expect = 7e-57 Identities = 268/338 (79%), Gaps = 17/338 (5%) Strand=Plus/Plus Query 14 AAGGAAGCAG-TTCATGGGATTCATGATGATGGATTCTAGGGTTTGTTCAATGAATTTTG 72 ||||||| || ||| | ||||||||||||||||||||||| || |||| ||||| || | Sbjct 157 AAGGAAGGAGTTTC-TAGGATTCATGATGATGGATTCTAGAGTCTGTTGGATGAAATTCG 215 Query 73 ATCTCCAAGGAATCCATAACAACGA-AGAAGACTTTGTTGATCCATGTATAAAGCAAATT 131 |||||||||| |||| |||||| | | | | | |||| ||||||| |||| || Sbjct 216 ATCTCCAAGGGATCCGCAACAAC-ACCTTGGTCGAT-AT-ATCCTTGTATAAGGCAAGTT 272 Query 132 GCTAAACTTGATCAAATCGAGATATCTAAAGTCCTTCAATGCGATGGTTTCTTGTTATGC 191 | | |||||||||| || ||| |||||||| | ||||| ||||| || || ||||||||| Sbjct 273 GGTCAACTTGATCAGATGGAGGTATCTAAACT-CTTCACTGCGACGGCTTGTTGTTATGC 331 Query 192 GTCATTAAGGACAACTCGAGGCTTTTAGTGTGGAATCCTTATTTAGGGCAAA-C--AAGG 248 || | ||||| ||||||| ||| || ||||||||||| |||||||| |||| | | || Sbjct 332 GTGGTGAAGGATAACTCGATGCTCTTGGTGTGGAATCCCTATTTAGGTCAAACCGTACGG 391 Query 249 TTTATCAAACCAAGAAACAGTTTCCACAGATTAGACAGGTATGCTCTCGGATACGACA-G 307 ||| |||| ||||||||||||||||||||||||||||||||||| || ||||||| | Sbjct 392 ---ATCCAACCGAGAAACAGTTTCCACAGATTAGACAGGTATGCTCTTGGTTACGACAAG 448 Query 308 TAACCACAACTACAAAATCTTGACTCTTT-TGGATGAT 344 |||| ||| |||| ||| ||| ||| |||||||| Sbjct 449 -AACCGTAACCACAAGATCCTGAGG-TTTGTGGATGAT 484 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22203492974 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5