BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946515
Length=467
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17200.1 | Symbols: | F-box and associated interaction doma... 453 7e-127
AT3G15935.1 | Symbols: | pseudogene, hypothetical protein | ch... 220 7e-57
> AT4G17200.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr4:9651108-9652253 FORWARD LENGTH=1146
Length=1146
Score = 453 bits (245), Expect = 7e-127
Identities = 296/320 (93%), Gaps = 6/320 (2%)
Strand=Plus/Plus
Query 14 AAGGAAGCAGTTCATGGGATTCATGATGATGGATTCTAGGGTTTGTTCAATGAATTTTGA 73
|||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 141 AAGGAAGCAGTTTATGGGATTCACGATGATGGATTCTAGGGTTTGTTCAATGAAGTTTGA 200
Query 74 TCTCCAAGGAATCC-ATAACAACGAAGAAGACTTTGTTGATCCATGTATAAAGCAAATTG 132
|||||||||||||| | ||||||||| | |||||||||||||||||||||||||||||||
Sbjct 201 TCTCCAAGGAATCCGA-AACAACGAACATGACTTTGTTGATCCATGTATAAAGCAAATTG 259
Query 133 CTAAACTTGATCAAATCGAGATATCTAAAGTCCTTCAATGCGATGGTTTCTTGTTATGCG 192
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 260 CTAAACTTGATCAAATCGAGGTATCTAAAGTCCTTCAATGCGATGGTTTGTTGTTATGCG 319
Query 193 TCATTAAGGACAACTCGAGGCTTTTAGTGTGGAATCCTTATTTAGGGCAAACAAGGTTTA 252
|| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 320 TCGGTAAGGACAACTCGAGGCTTCTAGTGTGGAATCCTTATTTAGGGCAAACAAGGTTTA 379
Query 253 TCAAACCAAGAAACAG-TTTCCACAGATTAGACA-GGTATGCTCTCGGATACGACAGTAA 310
||||||||||||| || ||| ||| | | || | |||| ||||||||||| |||| |||
Sbjct 380 TCAAACCAAGAAAAAGGTTTA-ACAAACTCGA-ATGGTACGCTCTCGGATATGACAATAA 437
Query 311 CCACAACTACAAAATCTTGA 330
||||||||||||||||||||
Sbjct 438 CCACAACTACAAAATCTTGA 457
> AT3G15935.1 | Symbols: | pseudogene, hypothetical protein |
chr3:5390599-5391763 REVERSE LENGTH=1165
Length=1165
Score = 220 bits (119), Expect = 7e-57
Identities = 268/338 (79%), Gaps = 17/338 (5%)
Strand=Plus/Plus
Query 14 AAGGAAGCAG-TTCATGGGATTCATGATGATGGATTCTAGGGTTTGTTCAATGAATTTTG 72
||||||| || ||| | ||||||||||||||||||||||| || |||| ||||| || |
Sbjct 157 AAGGAAGGAGTTTC-TAGGATTCATGATGATGGATTCTAGAGTCTGTTGGATGAAATTCG 215
Query 73 ATCTCCAAGGAATCCATAACAACGA-AGAAGACTTTGTTGATCCATGTATAAAGCAAATT 131
|||||||||| |||| |||||| | | | | | |||| ||||||| |||| ||
Sbjct 216 ATCTCCAAGGGATCCGCAACAAC-ACCTTGGTCGAT-AT-ATCCTTGTATAAGGCAAGTT 272
Query 132 GCTAAACTTGATCAAATCGAGATATCTAAAGTCCTTCAATGCGATGGTTTCTTGTTATGC 191
| | |||||||||| || ||| |||||||| | ||||| ||||| || || |||||||||
Sbjct 273 GGTCAACTTGATCAGATGGAGGTATCTAAACT-CTTCACTGCGACGGCTTGTTGTTATGC 331
Query 192 GTCATTAAGGACAACTCGAGGCTTTTAGTGTGGAATCCTTATTTAGGGCAAA-C--AAGG 248
|| | ||||| ||||||| ||| || ||||||||||| |||||||| |||| | | ||
Sbjct 332 GTGGTGAAGGATAACTCGATGCTCTTGGTGTGGAATCCCTATTTAGGTCAAACCGTACGG 391
Query 249 TTTATCAAACCAAGAAACAGTTTCCACAGATTAGACAGGTATGCTCTCGGATACGACA-G 307
||| |||| ||||||||||||||||||||||||||||||||||| || ||||||| |
Sbjct 392 ---ATCCAACCGAGAAACAGTTTCCACAGATTAGACAGGTATGCTCTTGGTTACGACAAG 448
Query 308 TAACCACAACTACAAAATCTTGACTCTTT-TGGATGAT 344
|||| ||| |||| ||| ||| ||| ||||||||
Sbjct 449 -AACCGTAACCACAAGATCCTGAGG-TTTGTGGATGAT 484
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22203492974
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5