BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946520
Length=1546
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17150.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 2508 0.0
> AT4G17150.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr4:9638174-9641756 FORWARD LENGTH=2034
Length=2034
Score = 2508 bits (1358), Expect = 0.0
Identities = 1474/1530 (96%), Gaps = 8/1530 (1%)
Strand=Plus/Plus
Query 7 ACTACTACTAGCTCATGAGTTCATTGGTACTTGGAATCAAGATGATTGATCAGTTCATCA 66
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 404 ACTACTACTAGCTCATGAGTTCACTGGTACTTGGAATTAAGATGATTGATCAGTTCATCA 463
Query 67 ACTTTGTAATTCGACCTCCTAGGGCTGAGTATGATCCTGATCAGTATTTGTGGGAGAAGG 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 ACTTTGTAATTCGACCTCCTAGGGCTGAGTATGATCCTGATCAGTATTTGTGGGAGAAGG 523
Query 127 AGTTTAGCCTCGGTGGCACAAAGTGTAAAAGACAAGACTTGGAGCTTACAAATTCGAGGG 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 AGTTTAGCCTCGGTGGCACAAAGTGTAAAAGACAAGACTTGGAGCTTACAAATTCGAGGG 583
Query 187 GTCACACCTTGCGTTGCAGTCATTATGTTCCCTCATCTTCTCTGGAGGATACTCCTCTCC 246
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 584 GTCACACTTTGCGTTGCAGTCATTATGTTCCCTCATCTTCTCGGGAGGATACTCCTCTCC 643
Query 247 CCTGTGTTATATACTGTCATGGCAATAGTGGATGTAGAGCAGACGCAAATGAGGCAGTTA 306
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 644 CCTGTGTTATATACTGTCATGGCAATAGTGGATGTAGGGCAGATGCAAATGAGGCAGTTA 703
Query 307 TGGTTCTTCTTCCATCTAACATTACTGTTTTCACCCTTGACTTCTCGGGGTCAGGCTTAT 366
||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 704 TGGTTCTCCTCCCATCTAACATAACTGTTTTCACCCTTGACTTCTCGGGGTCAGGCTTAT 763
Query 367 CTGAGGGTGATTATGTAAGCCTTGGCTGGCATGAGAAGGATGATCTCAAGACTGTGGTAT 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 CTGAGGGTGATTATGTAAGCCTTGGCTGGCATGAGAAGGATGATCTCAAGACTGTGGTAT 823
Query 427 CTTACCTTAGAAACAGCGATCAAGTATCGCGTATTGGACTTTGGGGACGATCTATGGGTG 486
||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 824 CTTACCTGAGAAACAGCAATCAAGTATCCCGTATTGGACTTTGGGGACGATCTATGGGTG 883
Query 487 CAGTTACCAGCCTTCTTTATGGAGCAGAAGATCCTTCAATTGCTGGAATGGTCTTAGACA 546
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 884 CAGTTACCAGCCTTCTCTATGGAGCAGAAGATCCTTCAATTGCTGGAATGGTCCTAGACA 943
Query 547 GTGCATTTTCAAACTTATTTGATCTGATGATGGAACTAGTGGATGTCTACAAAATCCGAC 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 GTGCATTTTCAAACTTATTTGATCTGATGATGGAACTAGTGGATGTCTACAAAATCCGAC 1003
Query 607 TACCGAAATTCACAGTTAAAGTGGCTGTGCAGTACATGCGGCGTATAATTCAGAAAAAGG 666
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 TTCCGAAATTCACAGTTAAAGTGGCTGTGCAGTACATGCGGCGTATAATTCAGAAAAAGG 1063
Query 667 CGAAGTTTAATATTATGGATCTCAATTGTGTTAAGGTTTCACCCAAGACTTTTATTCCAG 726
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1064 CGAAGTTTAATATTATGGATCTCAATTGTGTTAAGGTTTCGCCCAAGACTTTTATTCCAG 1123
Query 727 CTTTATTTGGGCATGCAAGCGGAGACAAATTCATCCAACCTCATCACTCTGACCTCATTC 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 CTTTATTTGGGCATGCAAGCGGAGACAAATTCATCCAACCTCATCACTCTGACCTCATTC 1183
Query 787 TCAAGTGCTATGCGGGAGACAAAAATATCATCAAGTTTGATGGCGATCACAATTCTTCGC 846
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1184 TCAAGTGCTATGCGGGAGACAAAAATATCATCAAGTTTGATGGTGATCACAACTCTTCGC 1243
Query 847 GGCCGCAATCTTTTTATGATTCAGTGTTAATATTCTTCTACAATGTTCTTCGCCCGCCTC 906
| ||||| |||| |||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1244 GCCCGCAGTCTTATTATGATTCAGTATTAGTATTCTTCTACAATGTTCTTCGCCCGCCTC 1303
Query 907 CAATTTCTTCAGCTTGCTCATCTAAACTTGAAAGTTATTACAGTCTGGGAGATGTCAATA 966
||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1304 CAATTTCTTCATCTTACTCATCTAAACTTGAAAGTTATTACAGTTTGGGAGATGTCAATA 1363
Query 967 GCGCTACTGGTTTGGATGAGAGTTTTCTGTATGAGATCATATCTGGTCTTCGTTCGGCAT 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1364 GCGCTACTGGTTTGGATGAGAGTTTTCTGTATGAGATCATATCTGGTCTTCGTTCGGCAT 1423
Query 1027 GTATCGATGTTGCAAGTTCTTCTTCTGCACCTCCTGCCCCTCTAACCACAAAGCCAACGA 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1424 GTATCGATGTTGCAAGTTCTTCTTCTGCACCTCCTGCCCCTCTAACCACAAAGCCAACGA 1483
Query 1087 CTGAGCTCCTTTCAGAAGCCATGCCCATGACAGATA-AGGATGAC-GTGCTTGTGGAAGA 1144
|||||||||||||||||| |||||||||| ||||| || || || ||||||||||||||
Sbjct 1484 ATGAGCTCCTTTCAGAAGCTATGCCCATGATAGATACAG-AT-ACCGTGCTTGTGGAAGA 1541
Query 1145 TAATGATCACAACATGGACGACCCTGAAAACTTCGAGGGGAGGCCTGTTGATCAGTTTGA 1204
||||||||||||| ||||||||||||||||||||||||| | || | |||||||||||||
Sbjct 1542 TAATGATCACAACGTGGACGACCCTGAAAACTTCGAGGGAAAGCGTATTGATCAGTTTGA 1601
Query 1205 AGATGGATGTTCATTTACAAGCTCCAACAGGGAAAGCTGGGGCAGATGCTCTTCACTAGG 1264
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1602 AGAAGGCTGTTCATTTACAAGCTCCAACAGGGAAAGCTGGGGCAGATGCTCTTCACTAGG 1661
Query 1265 AGGCACTGAAGAAGATGAAAGTTTGACCGCTTGCGAGGGTGATCAGGTCGAGAAAACTGC 1324
|||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1662 AGGCACTGAAGAAGATGAGAGTTTGACAGCTGGCGAGGGTGATCAGGTCGAGAAAACTGC 1721
Query 1325 TGATATAAACACGGAACAAAAGCCaagagattctagtagagaagaagaagaagat-a--g 1381
|||| |||||||||||| |||||||||||||||||||||||||||||||||||| | |
Sbjct 1722 TGATGTAAACACGGAACGAAAGCCAAGAGATTCTAGTAGAGAAGAAGAAGAAGAAGACAG 1781
Query 1382 taaggagaagaaaattaagaacggaggtgaaacagatgccaagaagCCTAGACACGAAAA 1441
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1782 TAAGGAGAAGAAGATTAAGAACGGAGGTGAAACAGATGCAAAGAAGCCTAGACACGAAAA 1841
Query 1442 ATTGGAAAGATTGGAGGCTTTTAGCAAAAGACTGCGGCATCGCATCCTAAAGCGAGTAAA 1501
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1842 ATTGGAAAGATTGGAGGCCTTTAGCAAAAGACTGCGGCATTACATCCTAAAGCGAGTAAA 1901
Query 1502 CCATAGAAGACACCGTTCACCTTGACGAAA 1531
|||||||||||| ||||||||||||| |||
Sbjct 1902 CCATAGAAGACATCGTTCACCTTGAC-AAA 1930
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76304828400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5