BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946522
Length=1384
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17100.2 | Symbols: | EXPRESSED IN: 23 plant structures; EX... 1788 0.0
AT4G17098.1 | Symbols: | other RNA | chr4:9608632-9611700 FORW... 1002 0.0
> AT4G17100.2 | Symbols: | EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Endoribonuclease XendoU (InterPro:IPR018998). | chr4:9610102-9612676
REVERSE LENGTH=1539
Length=1539
Score = 1788 bits (968), Expect = 0.0
Identities = 1036/1069 (97%), Gaps = 4/1069 (0%)
Strand=Plus/Plus
Query 316 AGGAGGACCAGGAAGAGAATACATATGCGGCTAAAGT-AGCCGAGAAACAAGACTTCTCG 374
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 429 AGGAGGACCAGGAAGAGAATACATATGCGGCTAAAGTGAG-CGAGAAACAAGACTTCTCG 487
Query 375 GAGAGCCAGCAAGAGGACAATGATGGTTGGGAAACTGTGGGAAAAAAGAAACCTGCAAGG 434
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 488 GAGAGCCAGCAAGAGGAAAATGATGGTTGGGAAACTGTGGGCAAAAAGAAACCTGCAAGG 547
Query 435 CAATCGCATAAGGTCCAGAAGGAGCAATGGCAAGATTACAAACGCCCAGCAAGCGAACAA 494
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 548 CAATCACATAAGGTCCAGAAGGAGCAATGGCAAGATTACAAACGCCCAGCAAGTGAACAA 607
Query 495 CACTACTCAGACGAAGTTGAAACTTATGGAAACCTAGAACCCTCACAACTAGAGCTCTCA 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 CACTACTCAGACGAAGTTGAAACTTATGGAAACCTAGAACCCTCACAACTAGAGCTCTCA 667
Query 555 GGTCTCTCAGAAGCTTGCAACAAACTGTGGGAGCTCGATTCAAACCGCCTTGTTCCTGGA 614
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 668 GGTCTCTCAGAAGCTTGCAACAAACTGTGGGAGCTCGATTTAAACCGCCTTGTTCCTGGA 727
Query 615 AACGATTATCAAATCGACTGCGGAGATGGGAAAAGGGTCCATGAGAGAGCTGATATGGCT 674
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 AGGGATTATCAAATCGACTGCGGAGATGGGAAAAGGGTCCATGAGAGAGCTGATATGGCT 787
Query 675 GAAGGACTACTATTCTCTTGGGTGAGCGACGAAGTCTTTAGAAAACCGACTTACGCCAGA 734
||||||||||| ||||||||||||||||| ||||||| |||||||||||||| |||||||
Sbjct 788 GAAGGACTACTGTTCTCTTGGGTGAGCGAGGAAGTCTCTAGAAAACCGACTTTCGCCAGA 847
Query 735 TTTTGTTCATTGCTTGACAACTACAACCCGAACGAAGGTTACAAAGAAGTAGTCACAGAA 794
|| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 848 TTCTGTTCATTGCTTGACAACTACAACCCCAACGAAGGTTACAAAGAAGTGGTCACAGAA 907
Query 795 GAAGAGAGGCAAGAGCAAGCGGCTTTCATTGAAGAAATTAGCAGAACCGCTGTGATCAAG 854
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 908 GAAGAGAGGCAAGAGCAAGCGGCTTTCATTGAAGAAATTAGCAGAACCTCTGTGATCAAG 967
Query 855 TACCTCCACAAGTACCTTGTGCTCAAGGACGTTGCTCCTGGAAGCTAC-CAGGAGTTCAA 913
||||| |||| ||||||||||||||||||||| ||||||||||||||| | ||||||||
Sbjct 968 TACCTTCACAGGTACCTTGTGCTCAAGGACGTCGCTCCTGGAAGCTACTTA-GAGTTCAA 1026
Query 914 GAGAATGTTGACAAGTCTCTGGTTTGATCTCTATGGCCGCGGAGGTACCTCTGGCTCATC 973
|||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct 1027 GAGAATGTTGACAAGTCTCTGGTTCGATCTGTATGGCCGCGGAGGTACATCTGGCTCATC 1086
Query 974 TTCTGCGTTTGAGCATGTCTTTGTAGGTGAGATCAAACAATCTGGTGGGGAGCAAGTCTC 1033
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1087 TTCTGCGTTTGAGCATGTCTTTGTAGGTGAGATCAAACAATCTGGTGGGGAACAAGTCTC 1146
Query 1034 CGGATTCCATAACTGGCTTCAGTTTTACTTGGAGGAAGCCAAAGGAACTGTAGATTATCA 1093
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 TGGATTCCATAACTGGCTTCAGTTTTACTTGGAGGAAGCCAAAGGAACTGTAGATTATCA 1206
Query 1094 AGGCTATATATTTCCCCGACGTCGCGGTGAAATTCCTGATTCAGAGACTCAGCTGCTAAC 1153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1207 AGGCTATATATTTCCCCGACGTCGCGGTGAAATTCCTGATTCAGAGACTCAGCTGCTAAC 1266
Query 1154 AATCCAATTCGAGTGGAACGGTGTTCTAAAATCAGTCTCAAGTACTCTAGTAGGAGTAAG 1213
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1267 AATCCAATTCGAGTGGAACGGTGTTCTAAAATCAGTCTCAAGTACTCTAGTTGGAGTAAG 1326
Query 1214 TCCAGAGTTCGAGTTGGCTCTATACACAATGTGTTTCTTCATGGGCAGAGAAGAAAACCA 1273
||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||
Sbjct 1327 TCCAGAGTTCGAGTTGGCTCTATACACCATGTGTTTCTTCATGGGCACAGAAGATAACCA 1386
Query 1274 CATACAGTTGGGTCCATACAATGTCAATGTCAAATGTTACCGACTTGGCAACAACCGTAT 1333
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1387 CATTCAGTTGGGTCCATACAATGTCAATGTCAAATGTTACCGACTTGGCAACAACCGTAT 1446
Query 1334 CGGCTCAGCTTTCCCCATTGCAGAATCTTGAAACCTCTCTTGATGGCTC 1382
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1447 CGGCTCAGCTTTCCCCATTGCAGAATCTTGAAACCTCTCTTGATGGCTC 1495
Score = 320 bits (173), Expect = 2e-86
Identities = 242/272 (89%), Gaps = 18/272 (7%)
Strand=Plus/Plus
Query 6 TTCTTGTGAGAGACAATGGACGGATTGATCAGAGGTTT-G--G--TCGACGTGGCTATTG 60
||| ||| |||||||||||||||||||||||||||||| | | ||||||||||||| |
Sbjct 149 TTCCTGTTAGAGACAATGGACGGATTGATCAGAGGTTTGGTCGACTCGACGTGGCTATCG 208
Query 61 GAGGAAACCAACGCCGCGGCGGAGAC---------GATGATGAAGGGAACTCGAGGGACG 111
|||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 209 GAGGAAACCAACGCCGCGGCGGAGACGATGGTGGTGATGATGAAGGCAACTCGAGGGACG 268
Query 112 AGAGATCCAGATCTACTTGGGC---TGAT-GTGGTTTCCGGTGAGGAGGAGGATCAGAAT 167
|||||||||||||||||||||| || | ||||||||||||||||| ||||||||||||
Sbjct 269 AGAGATCCAGATCTACTTGGGCTAATGTTCGTGGTTTCCGGTGAGGAAGAGGATCAGAAT 328
Query 168 CGCGCGGGAGGATCGTCGCACGGTCGACGCCAGAATTTAGAGGAGAATCAATGGGAGAAG 227
||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||
Sbjct 329 CGCGCGGGAGGATCGTCGCACGGCCGTCGCCAGAATTCAGAGGAGAATCAATGGGAGAAG 388
Query 228 AAGGGAGAAAGGATTCCTACAAGGCATTCACA 259
||||| |||||| |||| ||||||||||||||
Sbjct 389 AAGGGCGAAAGGCTTCCCACAAGGCATTCACA 420
> AT4G17098.1 | Symbols: | other RNA | chr4:9608632-9611700 FORWARD
LENGTH=1709
Length=1709
Score = 1002 bits (542), Expect = 0.0
Identities = 589/612 (96%), Gaps = 2/612 (0%)
Strand=Plus/Minus
Query 445 AGGTCCAGAAGGAGCAATGGCAAGATTACAAACGCCCAGCAAGCGAACAACACTACTCAG 504
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1300 AGGTCCAGAAGGAGCAATGGCAAGATTACAAACGCCCAGCAAGTGAACAACACTACTCAG 1241
Query 505 ACGAAGTTGAAACTTATGGAAACCTAGAACCCTCACAACTAGAGCTCTCAGGTCTCTCAG 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1240 ACGAAGTTGAAACTTATGGAAACCTAGAACCCTCACAACTAGAGCTCTCAGGTCTCTCAG 1181
Query 565 AAGCTTGCAACAAACTGTGGGAGCTCGATTCAAACCGCCTTGTTCCTGGAAACGATTATC 624
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1180 AAGCTTGCAACAAACTGTGGGAGCTCGATTTAAACCGCCTTGTTCCTGGAAGGGATTATC 1121
Query 625 AAATCGACTGCGGAGATGGGAAAAGGGTCCATGAGAGAGCTGATATGGCTGAAGGACTAC 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 AAATCGACTGCGGAGATGGGAAAAGGGTCCATGAGAGAGCTGATATGGCTGAAGGACTAC 1061
Query 685 TATTCTCTTGGGTGAGCGACGAAGTCTTTAGAAAACCGACTTACGCCAGATTTTGTTCAT 744
| ||||||||||||||||| ||||||| |||||||||||||| ||||||||| |||||||
Sbjct 1060 TGTTCTCTTGGGTGAGCGAGGAAGTCTCTAGAAAACCGACTTTCGCCAGATTCTGTTCAT 1001
Query 745 TGCTTGACAACTACAACCCGAACGAAGGTTACAAAGAAGTAGTCACAGAAGAAGAGAGGC 804
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1000 TGCTTGACAACTACAACCCCAACGAAGGTTACAAAGAAGTGGTCACAGAAGAAGAGAGGC 941
Query 805 AAGAGCAAGCGGCTTTCATTGAAGAAATTAGCAGAACCGCTGTGATCAAGTACCTCCACA 864
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 940 AAGAGCAAGCGGCTTTCATTGAAGAAATTAGCAGAACCTCTGTGATCAAGTACCTTCACA 881
Query 865 AGTACCTTGTGCTCAAGGACGTTGCTCCTGGAAGCTACC-AGGAGTTCAAGAGAATGTTG 923
||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||
Sbjct 880 GGTACCTTGTGCTCAAGGACGTCGCTCCTGGAAGCTACTTAG-AGTTCAAGAGAATGTTG 822
Query 924 ACAAGTCTCTGGTTTGATCTCTATGGCCGCGGAGGTACCTCTGGCTCATCTTCTGCGTTT 983
|||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 821 ACAAGTCTCTGGTTCGATCTGTATGGCCGCGGAGGTACATCTGGCTCATCTTCTGCGTTT 762
Query 984 GAGCATGTCTTTGTAGGTGAGATCAAACAATCTGGTGGGGAGCAAGTCTCCGGATTCCAT 1043
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 761 GAGCATGTCTTTGTAGGTGAGATCAAACAATCTGGTGGGGAACAAGTCTCTGGATTCCAT 702
Query 1044 AACTGGCTTCAG 1055
||||||||||||
Sbjct 701 AACTGGCTTCAG 690
Score = 444 bits (240), Expect = 1e-123
Identities = 250/255 (98%), Gaps = 0/255 (0%)
Strand=Plus/Minus
Query 1128 CCTGATTCAGAGACTCAGCTGCTAACAATCCAATTCGAGTGGAACGGTGTTCTAAAATCA 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 CCTGATTCAGAGACTCAGCTGCTAACAATCCAATTCGAGTGGAACGGTGTTCTAAAATCA 350
Query 1188 GTCTCAAGTACTCTAGTAGGAGTAAGTCCAGAGTTCGAGTTGGCTCTATACACAATGTGT 1247
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 349 GTCTCAAGTACTCTAGTTGGAGTAAGTCCAGAGTTCGAGTTGGCTCTATACACCATGTGT 290
Query 1248 TTCTTCATGGGCAGAGAAGAAAACCACATACAGTTGGGTCCATACAATGTCAATGTCAAA 1307
||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 289 TTCTTCATGGGCACAGAAGATAACCACATTCAGTTGGGTCCATACAATGTCAATGTCAAA 230
Query 1308 TGTTACCGACTTGGCAACAACCGTATCGGCTCAGCTTTCCCCATTGCAGAATCTTGAAAC 1367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 TGTTACCGACTTGGCAACAACCGTATCGGCTCAGCTTTCCCCATTGCAGAATCTTGAAAC 170
Query 1368 CTCTCTTGATGGCTC 1382
|||||||||||||||
Sbjct 169 CTCTCTTGATGGCTC 155
Score = 141 bits (76), Expect = 2e-32
Identities = 102/114 (89%), Gaps = 4/114 (4%)
Strand=Plus/Minus
Query 267 TTACCTGCAAAACAAGCCTCAAAGATTTGGCATTTTGATTTTCCCACACAGGAGGACCAG 326
|||||||| ||| |||||| || ||| |||||||||||| ||||| ||||||||||||
Sbjct 1689 TTACCTGC-AAA-AAGCCTTTAATATTCAGCATTTTGATTTCCCCACGCAGGAGGACCAG 1632
Query 327 GAAGAGAATACATATGCGGCTAAAGT-AGCCGAGAAACAAGACTTCTCGGAGAG 379
|||||||||||||||||||||||||| ||| ||||||||||||||||||| |||
Sbjct 1631 GAAGAGAATACATATGCGGCTAAAGTGAGC-GAGAAACAAGACTTCTCGGTGAG 1579
Score = 137 bits (74), Expect = 2e-31
Identities = 74/74 (100%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 1054 AGTTTTACTTGGAGGAAGCCAAAGGAACTGTAGATTATCAAGGCTATATATTTCCCCGAC 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 AGTTTTACTTGGAGGAAGCCAAAGGAACTGTAGATTATCAAGGCTATATATTTCCCCGAC 525
Query 1114 GTCGCGGTGAAATT 1127
||||||||||||||
Sbjct 524 GTCGCGGTGAAATT 511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68172340110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5