BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946531
Length=796
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17030.1 | Symbols: ATEXLB1, EXPR, AT-EXPR, ATEXPR1, ATHEXP ... 1323 0.0
> AT4G17030.1 | Symbols: ATEXLB1, EXPR, AT-EXPR, ATEXPR1, ATHEXP
BETA 3.1, EXLB1 | expansin-like B1 | chr4:9581586-9583290
REVERSE LENGTH=1093
Length=1093
Score = 1323 bits (716), Expect = 0.0
Identities = 769/795 (97%), Gaps = 2/795 (0%)
Strand=Plus/Plus
Query 4 TAGATAAG--AATAACAATATGAAGCAATCTCACGTTTTGCTTCTCCTACTTGTTCAAGT 61
|||||||| || |||||||||||||| ||||||||||||||||| ||| ||||||||||
Sbjct 91 TAGATAAGATAACAACAATATGAAGCATTCTCACGTTTTGCTTCTTCTATTTGTTCAAGT 150
Query 62 CATTGTCCTTTTGCCTCTCCTTTGTCTATCCGACGACTTTGTTAACTCTAGAGCTACTTA 121
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 151 CATTGTCCTTTTGCCTCTCCTTTGTCTATCCGACGATTTTGTTAACTCTAGAGCTACTTA 210
Query 122 TTATGGCAGCCCCGATTGCAAAGCAAATCCTCGAGGACATTGTGGGTATGGAGAATTTGG 181
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 211 TTATGGCAGCCCCGATTGCAAAGCAAATCCTCGGGGACATTGTGGGTATGGAGAATTTGG 270
Query 182 AAGAGATATCAATAACGGTGAAGTGAGTGGTGTTTCATGGCGACTATGGAACAATGGAAC 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 271 AAGAGATATCAATAACGGTGAAGTGAGTGGTGTTTCATGGCGACTATGGAACAATGGAAC 330
Query 242 TGGCTGTGGTGCTTGTTACCAGGTGAGGTGCAAAATCCCTCCACACTGCAGTGAGGATGG 301
||||||||||||||||||||||||||||||||| || || ||||||||||||||||| ||
Sbjct 331 TGGCTGTGGTGCTTGTTACCAGGTGAGGTGCAAGATACCACCACACTGCAGTGAGGAAGG 390
Query 302 AGTGTACGTAGTGGCTACGGACTCCGGAGAAGGAGATGGTACGGACTTCATCTTAAGCCC 361
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 391 AGTATACGTAGTGGCTACGGACTCCGGAGAAGGAGATGGCACGGACTTCATCTTAAGCCC 450
Query 362 TAAGGCGTACGGACGTATGGCACGACCCGGCACAGAAAATCAGCTCTACTCCTTCGGTGT 421
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 451 TAAGGCGTACGGACGTATGGCGCGACCCGGCACAGAAAATCAGCTCTACTCCTTCGGTGT 510
Query 422 AGTCGACGTTGAGTACCAAAGGATCCCTTGCCGATACGCAGGTTACAATCTGGTGTATAA 481
|||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 511 AGTCAACGTTGAGTACCAAAGGATCCCTTGCCGATACGCAGGGTATAATCTGGTGTATAA 570
Query 482 GGTCCATGAGAAAAGCTATAATCCTCATTATCTTGCCATTCTTGTCTTGTACGTTGGTGG 541
| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 571 GATCCATGAGAAAAGCTACAATCCTCATTATCTTGCCATCCTTGTCTTGTACGTTGGTGG 630
Query 542 TGTCAATGACATCCTCGCCGTTGAAGTCTGGCAGGAGGATTGCAAAGAGTGGAGACGTAT 601
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 TGTTAATGACATCCTCGCCGTTGAAGTCTGGCAGGAGGATTGCAAAGAGTGGAGACGTAT 690
Query 602 GAGAAGAGTGTTTGGAGCGGTTCATGATTTGCAGAATCCACCAAGAGGCACTCTCACATT 661
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 691 GAGAAGAGTGTTTGGAGCGGTTCATGATTTGCAGAATCCACCTAGAGGCACTCTCACATT 750
Query 662 GAGGTTCTTAGTCTACGGAAGCGCCGGAATCAATTGGATCCAATCGCCAAACGCTATTCC 721
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 751 GAGGTTCTTAGTCTACGGAAGCGCAGGAATCAATTGGATCCAATCGCCAAACGCTATTCC 810
Query 722 CGCTGATTGGACCGCCGGAGCCACCTACGACTCCAACATTCTACTTACTTAATTGTTTCA 781
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 811 CGCTGATTGGACTGCCGGAGCCACCTACGACTCCAACATTCTACTTACTTAATTGATTCA 870
Query 782 CTTTTCATCAGTGTG 796
|||||||||||||||
Sbjct 871 CTTTTCATCAGTGTG 885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38730527337
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5