BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946539

Length=428
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G16970.1 | Symbols:  | Protein kinase superfamily protein | ...   147    1e-34
  AT4G16915.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   100    9e-21


> AT4G16970.1 | Symbols:  | Protein kinase superfamily protein 
| chr4:9551428-9555784 REVERSE LENGTH=2776
Length=2776

 Score =  147 bits (79),  Expect = 1e-34
 Identities = 93/100 (93%), Gaps = 0/100 (0%)
 Strand=Plus/Plus

Query  266   ATCTTTGCATCAAGGGCCTAAGATAGACGTGTGGTCTGCGGGAGTTACTCTGTTATACCT  325
             ||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  2217  ATCTTTGCACCAAGGACCTAAGATAGACGTGTGGTCTGCGGGAGTTACTTTGTTATACCT  2276

Query  326   CATGATGGGGACGACACCTTTCACTGCTGACCCTGAACAG  365
             ||| ||||| | |||||||||||||| |||||||||||||
Sbjct  2277  CATAATGGGAAGGACACCTTTCACTGGTGACCCTGAACAG  2316


> AT4G16915.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; Has 0 Blast hits 
to 0 proteins in 0 species (source: NCBI BLink). | chr4:9516724-9518697 
FORWARD LENGTH=711
Length=711

 Score =  100 bits (54),  Expect = 9e-21
 Identities = 54/54 (100%), Gaps = 0/54 (0%)
 Strand=Plus/Minus

Query  328  TGATGGGGACGACACCTTTCACTGCTGACCCTGAACAGTTAAGATCTGCCTTGA  381
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  577  TGATGGGGACGACACCTTTCACTGCTGACCCTGAACAGTTAAGATCTGCCTTGA  524



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20308170596


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5