BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946545
Length=1592
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16820.1 | Symbols: PLA-I{beta]2 | alpha/beta-Hydrolases sup... 2451 0.0
> AT4G16820.1 | Symbols: PLA-I{beta]2 | alpha/beta-Hydrolases superfamily
protein | chr4:9467563-9469116 FORWARD LENGTH=1554
Length=1554
Score = 2451 bits (1327), Expect = 0.0
Identities = 1480/1555 (95%), Gaps = 5/1555 (0%)
Strand=Plus/Plus
Query 22 ATGCATACACTTACGCCTAACGCCGACATATTCCAAGCTAAACGCCGTCGTTTCACTTG- 80
||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1 ATGCAGACACTTACGCCTAACGCCGACATATTCCATGCAAAACGCCGTCGTTTCACTTGC 60
Query 81 TA-A-TCAAACTTCGACTTTGATTCCGACGAAGCCGCTCTCGGTTTCTCCGGCGAGAAAA 138
| | ||| || ||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 61 AACACTCACACATCGACTTTGATTCCGACGAAGCCGCTCTCAGTTTCTCCCGCGAGAAAA 120
Query 139 ACCAACAAAGAACATCTCAGAAACCTTGAGAACGTTCTTAAAACTTCTTCAAGTTCTATA 198
|||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||
Sbjct 121 ACCAACAAAGAACATCTCAGAAACCTTGAGAACGTTCTTAGAACTTCGTCAAACTCTATA 180
Query 199 GATCATCTCGAAAATGTAACTTCTCGTCAAGATAAGACGACGACGAATACATCGACGTCG 258
|||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 181 GATCATATCGAAAATGTAACTTCTCGTCAAGAGAAGACGACGAAGAATACATCGACGTCA 240
Query 259 TCACTTCTTGGAGGTTTGAATTTGGCGCGAATCTGGCCTCAGATGAAAGCAGCCGTGGAC 318
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 241 TCACTTCTCGGAGGTTTGAATTTGGCGCGAATATGGCCTCAGATGAAAGCAGCCGTCGAC 300
Query 319 GAAATGTCTCCAAAGAATCTGAAACGGCTCCAAAGGCTTCTCTCGAAGTCATCGGAGGAA 378
|||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 301 GAAATGTCGCCAAAGAATCTGAAACGGCTCCAAAGGCTTCTCTCAAAGTCATCCGAGGAA 360
Query 379 CGTTCGCCGAAGAGTAAACTCGGGTCAAAATGGCGGGAGCTACACGGGTTAAACAACTGG 438
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 CGTTCGCCGAAGAGTAAACTCGGGTCTAAATGGCGGGAGCTACACGGGTTAAACAACTGG 420
Query 439 GCCGGGTTGTTGGATCCATTAGACGAGAATCTCCGGCGAGAGCTTGTCCGTTACGGAGAG 498
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 421 GCCGGGTTGTTGGATCCGTTAGACGAGAATCTCCGGCGAGAGCTTGTCCGCTACGGAGAG 480
Query 499 TTTGTACAAGCAGCTTATCACGCGTTTCACTCAGACCCGGAAGGTTCCCCGAGACACGTG 558
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 481 TTTGTACAAGCGGCTTATCACGCGTTTCACTCAGACCCGGAAGGTTCGCCGAGACACGTG 540
Query 559 GCCTTACCTGATGGGTCTTTTAAAGTAACGAAGAGTCTTTACGCCACATCATCCGTTCGT 618
|| |||||||||||||| |||||||| || ||||||||||||||||| ||||||||||||
Sbjct 541 GCGTTACCTGATGGGTCATTTAAAGTGACCAAGAGTCTTTACGCCACGTCATCCGTTCGT 600
Query 619 TTACCTAAATGGATCGATGACGTTGCACCGGATCTCCGGTGGATGACTAAACAGACGAGC 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTACCTAAATGGATCGATGACGTTGCACCGGATCTCCGGTGGATGACTAAACAGACGAGC 660
Query 679 TGGGTTGGTTACGTGGCGGTATGTGATGATCCGAGAGAGATCCGACGGATGGGAAGGAGG 738
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGGGTTGGTTACGTGGCGGTGTGTGATGATCCGAGAGAGATCCGACGGATGGGAAGGAGG 720
Query 739 GAGATCGTCATCGCCCTCCGTGGAACCGCCACGTTGCTCGAATGGTCAGAGAATTTCAGG 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GAGATCGTCATCGCCCTCCGTGGAACCGCCACGTTGCTCGAATGGTCAGAGAATTTCAGG 780
Query 799 CCCAATCTCGTTTCAATGCCTGAGCCCAAACCTGATCAATCCGACCCGACTCGACCCAAA 858
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 781 CCCAATCTCGTTTCAATGCCTGAGCCCAAACCCGATCAATCCGACCCGACTCGACCCAAA 840
Query 859 GTGGAATGTGGATTTAATAGCCTCTACACGACGGGTGGCCAACACGCACCAAGCCTCGCC 918
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 841 GTGGAATGCGGATTTAATAGCCTCTACACGACGGGTGACCAACACGCACCAAGCCTCGCC 900
Query 919 GAGTCGTTGGTCGGAGAAATCACCCGACTTGTCGAGCTCTACGCAGGAGAGGAGCTGAGC 978
||||| |||||||| ||||||| ||| || ||||||||||| |||||||||||||||||
Sbjct 901 GAGTCTTTGGTCGGCGAAATCAGCCGGCTCGTCGAGCTCTATGCAGGAGAGGAGCTGAGT 960
Query 979 ATCAGCGTCACGGGTCACAGCCTCGGTGCCGCAATCGCGCTTCTAGCCGCCGACGACATC 1038
|||||||| || || ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 961 ATCAGCGTAACCGGCCACAGCCTCGGCGCCGCAATCGCGCTTCTCGCCGCCGACGACATC 1020
Query 1039 GCCGAGCGTGTACCACACGCGCCTCCGGTTGCGGTGTTCTCCTTCGGCGGGCCTCGAGTT 1098
||||||||||| |||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 1021 GCCGAGCGTGTTCCACACGCGCCTCCGGTTGCGGTGTTTTCCTTTGGTGGGCCTCGAGTC 1080
Query 1099 GGGAACCGTGAGTTCGCGGATCGTTTGGATTCGAAAGGAGTGAAAGTCCTCCGCGTCGTG 1158
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1081 GGGAACCGTGAGTTCGCGGATCGTTTGGATTCGAAAGGAGTGAAAGTCCTCCGCGTGGTT 1140
Query 1159 AACAGCCAAGACGTGGTGACGAAAGTCCCCGGAATATTCTCCGATAACGATAAACATGGG 1218
||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||| |||
Sbjct 1141 AACAGCCAAGATGTGGTCACGAAAGTCCCCGGAATATTCGCCGATAACGATAAACAGGGG 1200
Query 1219 CAGAA-TCGTAATAACGGGAGAAGTCCAGGGGGTATAATGGAAATGGTGGAGAGGAACAA 1277
|| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1201 CA-AAGTCGTAATAACGGGAGAAGTCCAGGGGGTATTATGGAAATGGTGGAGAGGAACAA 1259
Query 1278 TCCATGGGCTTACTCGCATGTGGGAGCAGAGCTGCGTGTAGACATGAAGATGTCTCCGTA 1337
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1260 TCCATGGGCTTACTCGCATGTGGGAGCAGAGCTCCGTGTAGACATGAAGATGTCTCCGTA 1319
Query 1338 CTTGAAACCGAACGCTGACGTGGCGTGTTGCCATGACCTGGAAGCGTACTTGCACTTGGT 1397
||||||||| ||||||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct 1320 CTTGAAACCAAACGCTGACGTGGCGTGTTGCCATGACCTTGAGGCGTACTTGCACTTAGT 1379
Query 1398 CGACGGGTTTTTGGCATCTAACTGTCCGTTTCGTGCAAACGCGAAACGGAGTTTAAGGAA 1457
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1380 CGACGGGTTTTTGGCATCTAACTGTCCGTTTCGGGCAAACGCGAAACGGAGTTTAAGGAA 1439
Query 1458 ACTGTTGGATGAGCAAAGGTCAAACGTCAAGGTTTTATACACAAGAAAGTCTTTAAGACT 1517
|||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 1440 ACTGTTGGATGAGCAACGGTCAAACGTCAAGGTTTTGTACACAGGAAAGTCTTTAAGACT 1499
Query 1518 TAACCGTACTTTTCATGATAATGGAGATGTTTTGCCTAGTCCGTCGTCTTCATGA 1572
||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1500 TAACCGTACTTTTCATGATAACGGAGATGTTTTGCCTAGTCCGTCGTCTTCATGA 1554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78614053470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5