BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946563
Length=573
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16710.1 | Symbols: | glycosyltransferase family protein 28... 859 0.0
> AT4G16710.1 | Symbols: | glycosyltransferase family protein
28 | chr4:9398548-9399801 FORWARD LENGTH=919
Length=919
Score = 859 bits (465), Expect = 0.0
Identities = 541/577 (94%), Gaps = 8/577 (1%)
Strand=Plus/Plus
Query 4 AATCGAGTGGTGTAAAAAT---GGAGGATAGAGAGAATGCGAAGAGAGTAGTGTTTGTAA 60
||||||| || ||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 189 AATCGAGAAGTTTAAAAATGGAGGAGGATAGAGAGAATGCAAAGAGAGTAGTGTTTGTAA 248
Query 61 CTGTAGGAACAACGAGTTTCGATGCGCTTGTGAAAGCAGTGGTTAGTGAAGATGTTAAAG 120
||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||
Sbjct 249 CTGTAGGAACAACGAGTTTCGATGCTCTTGTGAAAGCAGTGGTTAGTCAAAATGTTAAAG 308
Query 121 ACGAATTGCAGAAGAGAGGATTTACTCATCTTCTCATTCAAATGGGTCGAGGAATCTTTT 180
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 309 ACGAACTGCAGAAGAGAGGATTTACTCATCTTCTTATTCAAATGGGTCGAGGAATCTTTT 368
Query 181 TCCCAAATAAGTGTGATGGAGCAGATGGATCATTAGTTGTGGATTACTTCACATTTTCCT 240
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 369 TCCCAACTAAGTGTGATGGAGCGGATGGATCATTAGTTGTGGATTACTTCACATTTTCCT 428
Query 241 CGAGTATCGCTGATTATATTCGGTCTGCATCTCTTGTTATTAGTCACGCTGGATCTGGAA 300
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 429 CAAGTATCGCTGATTATATTCGATCTGCATCTCTTGTTATTAGTCACGCTGGATCTGGAA 488
Query 301 GCATATTCGAGACACTAAAACTCGGGAAACCGTTGATTGTGGTAGTCAACGAAGATCTGA 360
| ||||| |||||||| ||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 489 GTATATTTGAGACACTGAAACTAGGGAAACCATTGATTGTGGTAGTGAACGAAGATCTGA 548
Query 361 TGGACAATCATCAATGTGAATTAGCTGAAGCACTTGAAGAGAGGAAGCACTTGTACTACA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 TGGACAATCATCAATGTGAATTAGCTGAAGCACTTGAAGAGAGGAAGCACTTGTACTACA 608
Query 421 CTCGTCCTCACACCCTTCATCAAACCTTGACGAAAATGGAGTTGGAGTCTCTGGTTCAAT 480
||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 609 CTCGTCCTCACTCCCTTCATCAAACCTTGACGAAAATGGAGTTGGGGTCTCTGGTTCAGT 668
Query 481 ATACTCCAGGGGACGGAACTCCTGTTGCCCGCATTATCGACAGGTTCCTCGGATTCCCTG 540
|||||||||| || |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 669 ATACTCCAGGTGATGGAACTCCTGTTGCTCGCATTATCGACAGGTTCCTTGGATTCCCTG 728
Query 541 ATGATTAAGCAGAA-A--TA--TGAAAACAAGTGTTT 572
|||||||| || || | || |||||||||||||||
Sbjct 729 ATGATTAAACACAACACATACATGAAAACAAGTGTTT 765
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27528312556
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5