BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946568
Length=1339
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16670.1 | Symbols: | Plant protein of unknown function (DU... 2025 0.0
AT4G16680.1 | Symbols: | P-loop containing nucleoside triphosp... 244 1e-63
> AT4G16670.1 | Symbols: | Plant protein of unknown function (DUF828)
with plant pleckstrin homology-like region | chr4:9385219-9387754
FORWARD LENGTH=1581
Length=1581
Score = 2025 bits (1096), Expect = 0.0
Identities = 1264/1344 (94%), Gaps = 16/1344 (1%)
Strand=Plus/Plus
Query 1 TAATCAGAGATCTGATCTAAATGGAGTATGACCGTACGTTAAACTTCATTGCATATGGAC 60
|||||||||||||||||||||||||||||||||||||||| ||||| ||| |||| ||||
Sbjct 88 TAATCAGAGATCTGATCTAAATGGAGTATGACCGTACGTTGAACTTGATTCCATACGGAC 147
Query 61 TACaagaagtaagagaggaagaagaaatcgaagaagaagaagacgatgaagagagCATGA 120
|||||| |||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 148 TACAAGGAGTAAGAGAGGAGGAAGAAATC------GAAGAAGACGATGAAGAGAGCATGA 201
Query 121 CGTTGTCGTCAGTGCCTGAAAACGAAACGTCTGAGTGTTCTTCACCTCCGGCTACGTATC 180
||||||||||||| || |||||||||||||| ||||||||||| |||||||| |||||||
Sbjct 202 CGTTGTCGTCAGTACCAGAAAACGAAACGTCGGAGTGTTCTTCGCCTCCGGCGACGTATC 261
Query 181 CTCCAATCCCTCCTCGGCCTAAAACTCCGAGAGAGCCGATGGAGTTTCTATGCAGATCAT 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 262 CTCCAATCCCTCCTCGGCCTAAAACACCGAGAGAGCCGATGGAGTTTCTATGCAGATCAT 321
Query 241 GGAGTCTTTCTACGTCTGAGATCTCTTTAGCTTTATCATCTCAAAAATCTGATAAACAAC 300
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 322 GGAGTCTTTCTACTTCTGAGATCTCTTTAGCTTTATCATCTCAGAAATCTGATAAACAAC 381
Query 301 TCAACAAAAACCCTAATATTTCTCGGTTGGCCGATGTCACTGCTAC-GGCTCCGGCAGCA 359
|||||||||||||||||||||||| |||||||||||||||| || | |||||||| ||||
Sbjct 382 TCAACAAAAACCCTAATATTTCTCAGTTGGCCGATGTCACTTCT-CTGGCTCCGGTAGCA 440
Query 360 CCACCACCGCCGCTACAGACGGGAAAGCTAGCGAGTGCGGTTAACGCGCGGAAAACGGGA 419
||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||
Sbjct 441 CCACCACCGCCGCTACAAACGGGAAAGCTAGCGAGTGCGGTTCACGCGCGGAGAACGGGA 500
Query 420 ACGATCGGAAAATGGTTCCACCACCGAGATTTCGTCGGCGGAAAGGTCTCCGCCGTAATG 479
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
Sbjct 501 ACGATCGGAAAATGGTTCCACCACCGAGAATTCGTCGGCGGGAAGGTCTCCGCCGTAAAG 560
Query 480 AAGAGAGATAAAGCTCGCGTGGAGAAAGCTCATCTGCATTCCGCCGTGTCCATTGCGTCT 539
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 AAGAGAGATAGAGTTCGCGTGGAGAAAGCTCATCTGCATTCCGCCGTGTCCATTGCGTCT 620
Query 540 CTAGCGACGGCTATCGCCGCCGTGACCGCTTCAGACAACCAAGACGGCTTCACTGGATCA 599
|| |||||||| |||||||| ||||||||||||| ||| |||||||||||| ||||||||
Sbjct 621 CTGGCGACGGCAATCGCCGCAGTGACCGCTTCAGGCAATCAAGACGGCTTCGCTGGATCA 680
Query 600 AAGATGAGCTCAGCGCTTGCCTCGGCATCGGAGTTGTTAGCTTCTCACTGCCTTGAATTG 659
|||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 681 AAGATGAGCTCAGCCCTTGCCTCGGCGTCGGAGTTGTTAGCTTCTCACTGCCTCGAATTG 740
Query 660 GCGGAGCTTGCCGGCGCCGACCACGATCGCGTCGTCTCTGCTGTCAGATCCGCCGTCGAT 719
|||||||||||||||||||| |||||||||||||||||||||||| |||| || || |||
Sbjct 741 GCGGAGCTTGCCGGCGCCGATCACGATCGCGTCGTCTCTGCTGTCCGATCAGCTGTTGAT 800
Query 720 GTTCGTGGACCTGGCGATTTGTTGACTCTAACTGCTGCAGCTGCAACAGCATTGAGAGGA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 GTTCGTGGACCTGGCGATTTGTTGACTCTAACTGCTGCAGCTGCAACAGCATTGAGAGGA 860
Query 780 GAAGCAGCTCTGAGGGCAAGGCTACCAAAGGAAGCTAAGAACAGTGCAGCTATAAGCCCT 839
||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 861 GAAGCAGCTTTGAGGGTAAGACTACCAAAGGAAGCTAAGAACAGTGCAGCTATAAGCCCC 920
Query 840 TGTGAGAGAGTTTTAACAGAGACTCATAGTTGCTCTTCTGAGCTCGATCGCAGTAGCACG 899
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 921 TGTGAGAGAGTTTTACCAGAGACTCATAGTTGCTCTTCTGAGCTCGATCGCACTAGCACG 980
Query 900 ACCGACGAACACATATCTGCAAAGGGAGTTGAAGAATCAACTGGAGAGCTAATGCAGTGC 959
||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 981 ACCGATGAACTCATATCTGCAAAAGGAGTTGAAGAATCAACTGGAGAGCTAATGCAGTGC 1040
Query 960 ACACGAAACGGAGTTCTGCGGTGGAAGCATGTAAAAGGGTACATCAACAAGAAATCTCAG 1019
||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1041 ACACGAAACGGTGTTCTGCGGTGGAAGCATGTAAAAGTGTACATCAACAAAAAATCTCAG 1100
Query 1020 GTCGTAGTAGAAATCAAAAGCAAACATGTTGTAGGAGCATTCTCCATGAAAAGCAAAGGC 1079
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1101 GTCATAGTAGAAATCAAAAGCAAACACGTTGTAGGAGCATTCTCCATGAAAAGCAAAGGC 1160
Query 1080 ATTGTAAATGATGTATGCGAGAAAGTCTCAGGCCTGCAAAATGGAAAAGAAATGGAAAAT 1139
|||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||
Sbjct 1161 ATTGTAAATGATGTATGCGAGACAGTCTCAGGCCTGCAAAATGGAAAAGACACGGAAAAC 1220
Query 1140 ACAGAAGAAGAGCTCTATTTCGGAATTAGTACAGGGAAAGGTCTAACAAAGTTCAAGTGC 1199
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1221 ACAGAAGAAGAGCTCTATTTCGGAATCGGTACAGGGAAAGGTCTGACAAAGTTCAAGTGC 1280
Query 1200 AAGAGCAAGGCTGATAAGCAGACATGGGTGGATAGCATCCGGAATCTTCTCCATCGAGTA 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1281 AAGAGCAAGGCTGATAAGCAGACATGGGTGGATAGCATCCGGAATCTTCTCCATCGAGTA 1340
Query 1260 ACTGCTGTTGAGGTTATCGACACTTGTCTTGAAACTACAAACATTG-CTGATAGCAAATA 1318
|||||||||||||| |||||||| ||||||||||| ||||||| | ||||||| |||
Sbjct 1341 ACTGCTGTTGAGGT---CGACACTTCTCTTGAAACTATAAACATTAAC-GATAGCACATA 1396
Query 1319 AATCATG-T--CTTGTGTTAACGG 1339
||||||| | |||||||||||||
Sbjct 1397 AATCATGATGTCTTGTGTTAACGG 1420
> AT4G16680.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr4:9387393-9390774
REVERSE LENGTH=2962
Length=2962
Score = 244 bits (132), Expect = 1e-63
Identities = 148/155 (95%), Gaps = 3/155 (2%)
Strand=Plus/Minus
Query 1140 ACAGAAGAAGAGCTCTATTTCGGAATTAGTACAGGGAAAGGTCTAACAAAGTTCAAGTGC 1199
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 2961 ACAGAAGAAGAGCTCTATTTCGGAATCGGTACAGGGAAAGGTCTGACAAAGTTCAAGTGC 2902
Query 1200 AAGAGCAAGGCTGATAAGCAGACATGGGTGGATAGCATCCGGAATCTTCTCCATCGAGTA 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2901 AAGAGCAAGGCTGATAAGCAGACATGGGTGGATAGCATCCGGAATCTTCTCCATCGAGTA 2842
Query 1260 ACTGCTGTTGAGGTTATCGACACTTGTCTTGAAAC 1294
|||||||||||||| |||||||| |||||||||
Sbjct 2841 ACTGCTGTTGAGGT---CGACACTTCTCTTGAAAC 2810
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65913315585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5