BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946574

Length=321
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G25340.1 | Symbols: FKBP53, ATFKBP53 | FK506 BINDING PROTEIN...   195    3e-49


> AT4G25340.1 | Symbols: FKBP53, ATFKBP53 | FK506 BINDING PROTEIN 
53 | chr4:12959442-12962699 REVERSE LENGTH=1716
Length=1716

 Score =  195 bits (105),  Expect = 3e-49
 Identities = 133/147 (90%), Gaps = 0/147 (0%)
 Strand=Plus/Plus

Query  1    CTTTCTTGATAGCAATCTTGAAATGTATCGTAATGCTTCGGTCCCAAAGTGCGGAGTTGT  60
            ||| ||||||||||||||||||| |||||| |||||| | | ||||||| | |||||| |
Sbjct  490  CTTCCTTGATAGCAATCTTGAAAGGTATCGGAATGCTGCTGCCCCAAAGAGTGGAGTTAT  549

Query  61   AATTGAGGAGATAGAAGATGAAGAGAAACCTGCCAAATATAGTAAGACAAAACGAACCAA  120
            ||||||||||||||||||||||||||||||||||||| ||| |||| |||||| ||||||
Sbjct  550  AATTGAGGAGATAGAAGATGAAGAGAAACCTGCCAAAGATAATAAGGCAAAACAAACCAA  609

Query  121  GAAGAAGAGTCAAGCTAGCGAAGATGA  147
            ||||||||||||||||||||||| |||
Sbjct  610  GAAGAAGAGTCAAGCTAGCGAAGGTGA  636



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14929521453


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5