BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946577
Length=1702
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16590.1 | Symbols: ATCSLA01, CSLA01, ATCSLA1 | cellulose sy... 2566 0.0
AT1G24070.1 | Symbols: ATCSLA10, CSLA10 | cellulose synthase-li... 898 0.0
> AT4G16590.1 | Symbols: ATCSLA01, CSLA01, ATCSLA1 | cellulose
synthase-like A01 | chr4:9345150-9349221 FORWARD LENGTH=1907
Length=1907
Score = 2566 bits (1389), Expect = 0.0
Identities = 1607/1711 (94%), Gaps = 19/1711 (1%)
Strand=Plus/Plus
Query 1 GCTTCAGTTCTAGAGCAACAATGTCTCTATTTCTGAAGCCCTTCCTCTTCCTATACGACA 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 42 GCTTCAGTTTTAGAGCAACAATGTCTCTATTTCTGAAGCCCTTCCTCTTCCTATACGACA 101
Query 61 CCACTCTTAGTCTCCTCTTACTTCTGTTTAATGGAGGGAGTCTTGAAGATGCTGCAGCAA 120
||||||||||||| |||||||||||||| |||||| |||||||||| ||| | ||||||
Sbjct 102 CCACTCTTAGTCTTCTCTTACTTCTGTTCAATGGATGGAGTCTTGAGGATACAGCAGCAG 161
Query 121 CACAGGAGAGGCTTGAAGCAGACAAAAATGCTGCAGAGTCTGAATGGATCCAACTCCAAT 180
| || |||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 162 CCCAAAAGAGGCGTGAAGCAGACAAAAATGCTGCAGAAACTGAATGGATCCAACTCCAAT 221
Query 181 ATTTGTGGACCAAAACGAGGAGTGTTGTATTACTTCCTGTTTTCAAGGGTTTGGTGGTTA 240
| |||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 222 ACTTGTGGACCAAAACAAGGAGTGTTGTACTACTTCCCGTTTTCAAGGGTTTGGTGGTTA 281
Query 241 TGTGTTTGGTTCTATCTATTATAGTGTTCTTCGAGAGTTTTTACATGAACTTTGTGATAC 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 TGTGTTTGGTTCTATCCATTATAGTGTTCTTCGAGAGTTTTTACATGAACTTTGTGATAC 341
Query 301 TCTTCGTCAAGTTATTTAGACGTAAACCCCATAAAGTGTACAAATGGGAGGCCATGCAAG 360
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 342 TCTTCGTCAAGTTATTTAAACGTAAACCCCATAAAGTGTACAAATGGGAGGCCATGCAAG 401
Query 361 AAGATGTTGAGGTTGGACCCGATAACTACCCAATGGTTCTTATCCAAATACCAATGTACA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 AAGATGTTGAGGTTGGACCCGATAACTACCCAATGGTTCTTATCCAAATACCAATGTACA 461
Query 421 ATGAAAAAGAGGTCTTTC-AATTATCTATAGC-GGCAATATGTAGTT-TGGTCTGGCCAC 477
||||||||||||| | | | ||| |||| | | ||| || || ||| |
Sbjct 462 ATGAAAAAGAGGT-ATACGCA-TATATATA-CTACCTTTAT-TAATTACACTCT-TTTAT 516
Query 478 CA-A--GCCG-CCTAGTAGTTCAAGTTGTAGATGATTCTACGGATCCGGCCGTAAGGGAC 533
| | | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 TATATGGTTGATTTAGTAGTTCAAGTTGTAGATGATTCTACGGATCCGGCCGTAAGGGAA 576
Query 534 GGTGTGGACATAGAGATTGCAAAATGGCAAAGCCAAGGCATAAACATAAGGTGTGAAAGG 593
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 GGTGTGGACGTAGAGATTGCAAAATGGCAAAGCCAAGGCATAAACATAAGGTGTGAAAGG 636
Query 594 AGAGATAATAGGAACGGCTATAAAGCTGGAGCTATGAAAGAAGCTCTTACGCATAGCTAC 653
|||||||| ||||||||||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct 637 AGAGATAACAGGAACGGCTACAAAGCCGGAGCTATGAAAGAAGCTCTTACGCAGAGCTAC 696
Query 654 GTCAAGCAATGCGATTTCGTAGCAGTCTTCGATGCCGATTTCCAACCAGAGCCCGATTAC 713
|||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 697 GTCAAGCAATGCGACTTCGTAGCAGTCTTCGATGCTGATTTCCAACCCGAGCCCGATTAT 756
Query 714 CTCATCCGCGCCGTCCCCTTT-CTTGTCCACAACCCTGACGTTGCTCTCGTTCAAGCCCG 772
||||||||||| || |||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 757 CTCATCCGCGCTGT-CCCTTTCCTTGTCCACAACCCTGACGTTGCTCTAGTTCAAGCCCG 815
Query 773 ATGGATATTTGTTAACGCGAACAAATGTTTGATGACGAGGATGCAAGAGATGTCTCTCAA 832
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 816 ATGGATATTTGTTAACGCGAACAAATGCTTGATGACGAGGATGCAAGAGATGTCTCTCAA 875
Query 833 CTATCATTTCAAGGTGGAACAAGAATCAGGGTCGACTAGACATGCTTTCTTCGGATTTAA 892
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 876 CTATCATTTCAAAGTGGAACAAGAATCAGGGTCGACTAGACATGCTTTCTTCGGGTTTAA 935
Query 893 TGGAACCGCGGGTGTATGGAGAATATCGGCAATGGAAGCAGCAGGAGGATGGAAATCAAG 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 936 TGGAACCGCGGGTGTATGGAGAATATCGGCAATGGAAGCAGCAGGAGGATGGAAATCAAG 995
Query 953 GACCACAGTAGAGGACATGGACTTGGCTGTTCGTGTTGGTCTTCACGGCTGGAAATTTGT 1012
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 996 GACCACAGTAGAGGACATGGACTTGGCTGTTCGTGTTGGTCTTCATGGCTGGAAATTTGT 1055
Query 1013 CTACCTTAACGACCTCACGGTGAGAAACGAGCTTCCAAGCAAATTCAAGGCCTACAGATT 1072
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1056 CTACCTTAACGACCTCACGGTGAGAAACGAGCTTCCAAGCAAATTTAAGGCCTACAGATT 1115
Query 1073 CCAGCAACATAGGTGGTCCTGTGGCCCGGCGAATCTATTTAGAAAAATGACGATGGAGAT 1132
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1116 CCAGCAACATAGGTGGTCCTGTGGACCGGCGAATCTATTTAGAAAAATGACGATGGAGAT 1175
Query 1133 CATTCGT-AATAAGAGAGTATCAATATGGAAGAAGTTCTATGTGATCTACAGCTTTTTCT 1191
|||| | ||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1176 CATTT-TCAATAAGAGAGTATCAATTTGGAAGAAGTTTTATGTGATCTACAGCTTTTTCT 1234
Query 1192 TCGTAAGAAAAGTGGCAGTACACTTCTTGACATTCTTCTTCTACTGTATAATTGTGCCAA 1251
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1235 TCGTAAGGAAAGTGGCGGTACACTTCTTGACATTCTTCTTCTACTGTATAATTGTGCCAA 1294
Query 1252 CAAGTGTCTTCTTCCCTGAAATCTACATCCCATCTTGGTCTACCATTTACATTCCCTCTT 1311
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1295 CAAGTGTCTTCTTCCCTGAAATCCACATCCCATCTTGGTCTACCATTTACGTTCCCTCTT 1354
Query 1312 TGATCACTATCTTCCACACCATGGCAACTCCAAGATCCTTCTACCTCGTGATATTTTGGA 1371
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1355 TGATCAGTATCTTCCACACCCTGGCAACTCCAAGATCCTTCTACCTCGTGATATTTTGGG 1414
Query 1372 TCTTGTTCGAGAATGTAATGGCTATGCATCGAACCAAAGGAACGTGCATTGGCCTACTTG 1431
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1415 TCTTGTTCGAGAATGTAATGGCTATGCATCGAACCAAAGGTACGTGCATTGGCCTACTTG 1474
Query 1432 AAGGAGGAAGAGTGAACGAATGGGTTGTGACCGAAAAATTAGGAGATGCTTTAAAGAATA 1491
||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||| ||
Sbjct 1475 AAGGAGGAAGAGTAAACGAATGGGTTGTGACCGAAAAACTAGGAGATGCTTTGAAGAGTA 1534
Query 1492 AGCTACTCTCGCAGGTCGTCCAAAGGAAATCTTGTTATGAGAGAGTGAATTCAAAGGAAG 1551
|||||||||| | ||| |||||||| |||||||||||| | ||||||||||| |||||||
Sbjct 1535 AGCTACTCTCTCGGGTAGTCCAAAGAAAATCTTGTTATCAAAGAGTGAATTCCAAGGAAG 1594
Query 1552 TGATGGTGGGGGTGTACATATTAGGATGTGCACTCTATGGCCTGATCTATGGCCACACAT 1611
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1595 TGATGGTGGGGGTATACATATTAGGATGTGCACTCTATGGCCTGATCTATGGGCACACAT 1654
Query 1612 GGTTACATTTCTATCTTTTTCTTCAGGCCACGGCCTTTTTCGTCTCCGGTTTTGGTTTTG 1671
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1655 GGTTACATTTCTATCTTTTTCTTCAGGCCACAGCCTTTTTCGTCTCCGGTTTTGGTTTTG 1714
Query 1672 TTGGAACCTAATAAGAACCTTCCCGGCCCAT 1702
| ||||||||| |||||||||||||||||
Sbjct 1715 TCGGAACCTAA---GAACCTTCCCGGCCCAT 1742
> AT1G24070.1 | Symbols: ATCSLA10, CSLA10 | cellulose synthase-like
A10 | chr1:8516238-8519734 REVERSE LENGTH=1858
Length=1858
Score = 898 bits (486), Expect = 0.0
Identities = 1135/1442 (79%), Gaps = 69/1442 (5%)
Strand=Plus/Plus
Query 222 TTCAAGGGTTTGGTGG-TTATGTGTTTGGT--TCTATCTATTATAGTGTTCTTCGAGAGT 278
|||||| ||||||||| || | |||||| | ||| || | |||| ||| | ||| ||
Sbjct 196 TTCAAGTGTTTGGTGGCTT-TTTGTTTGATAATCTCCCT-CT-TAGTTTTCATAGAGGGT 252
Query 279 TTTTACATGAACTTTGTGA-TACTCTTCGTCAAGTTATTTAGA-CGTAAACCCCATAAAG 336
| ||||||||| |||| | |||||| ||||||| | ||| || || |||||| | ||||
Sbjct 253 ATATACATGAACCTTGT-AGTACTCTACGTCAAGGTGTTT-GAGCGAAAACCCGAAAAAG 310
Query 337 TGTACAAATGGGAGGCCATGCAAGAAGATGTTGAGGTTGGACCCGATAA-CTACCCAATG 395
| || | ||||||||| |||||||| || ||||| |||||| || || |||||| |||
Sbjct 311 TTTATAGATGGGAGGCGATGCAAGAGGACATTGAGCTTGGACATGA-AACCTACCCCATG 369
Query 396 GTTCTTATCCAAATACCAATGTACAATGAAAAAGAGGTCTTTCAATTATCTATAGCG-GC 454
|| ||| ||||||| ||||||||||| |||||||||||| ||||||||||||||| | ||
Sbjct 370 GTCCTTGTCCAAATTCCAATGTACAACGAAAAAGAGGTCCTTCAATTATCTATAG-GTGC 428
Query 455 AATATGTAGTTTGGTCTGGCCACCAAG-CCGCCTAGTAGTTCAAGTTGTAGATGATTCTA 513
|||||| | | |||||| | ||||||| | ||||||||| |||||||||| |
Sbjct 429 TGCATGTAGACTAATATGGCCA-TTGGACCGCCTAATTGTTCAAGTTTTAGATGATTCCA 487
Query 514 CGGATCCGGCCGT-AAGGGACGGT-GTGGACATAGAGAT-TGCAAAATGGCAAAGCCAAG 570
| |||| || | || ||| | | ||| ||| |||| | |||||||||| ||||| |||
Sbjct 488 CTGATCAAACCATCAA-GGA-GCTGGTGAACACAGAG-TGTGCAAAATGGGAAAGCAAAG 544
Query 571 GCATAAACATAAGGTGTGAAAGGAGAGATAATAGGAACGGCTATAAAGCTGGAGCTATGA 630
| |||| |||| |||||| |||||||| || || || ||||| ||||| |||||| | |
Sbjct 545 GTGTAAATATAAAGTGTGAGAGGAGAGACAACAGAAATGGCTACAAAGCCGGAGCTCTTA 604
Query 631 AAGAA-GCTCTTACGCATAGCTACGTCAAGCAATGCGATT-TCGTAG-CAGTCTTCGATG 687
||||| || | | ||| | |||||| |||| |||| ||| | || | || ||||||| |
Sbjct 605 AAGAAGGC-ATGAAGCACAACTACGTGAAGCTATGCAATTAT-GTCGTCA-TCTTCGACG 661
Query 688 CCGATTTCCAACCAGAGCCCGATTACCT-CATCCGCGCCGTCCCCTTTCTTGTCCACAAC 746
| || |||||||| ||||| |||||||| || | | | |||||||| || || || |||
Sbjct 662 CAGACTTCCAACCGGAGCCTGATTACCTCCA-ACACTCTGTCCCCTTCCTCGTTCATAAC 720
Query 747 CCTGACGTTGCTCTCGTTCAAGCCCGATGGATATTTGTTAACGCGAACAAATGTTTGATG 806
|| || || ||||| |||||||||||||||| ||| | ||||| ||||| || ||||||
Sbjct 721 CCCGAGGTCGCTCTGGTTCAAGCCCGATGGAGATTCATGAACGCAAACAAGTGCTTGATG 780
Query 807 ACGAGGATGCAAGAGATGTCTCTCAACTATCA-TTTCAAGGTGGAACAAGAATCAGGGTC 865
|||||||||||||||||||| |||||||| || ||| | || || |||||||| || ||
Sbjct 781 ACGAGGATGCAAGAGATGTCCCTCAACTACCACTTT-ATGGCAGAGCAAGAATCTGGATC 839
Query 866 GACTAGACATGCTTTCTTCGGATTTAATGGAACCGCGGGTGTATGGAGAATATCGGCAAT 925
||||||||||| ||||| | || |||||||| ||||||||||||||||| | || ||
Sbjct 840 CACTAGACATGCCTTCTTTAGCTTCAATGGAACTGCGGGTGTATGGAGAATGGCCGCGAT 899
Query 926 GGAAGCAGCAGGAGGATGGAAATCA-AGGACCACAGTAGAGGACATGGACTTGGCTGTTC 984
||||| ||| ||||||||| || | |||| || |||||||||||||||||||| ||||
Sbjct 900 GGAAGAAGCTGGAGGATGG-CATGACCGGACTACTGTAGAGGACATGGACTTGGCCGTTC 958
Query 985 GTGTTGGTCTTCACGGCTGGAAATTTGTCTACCTTAACGACCTCACGGTGAGAAA-CGAG 1043
||| |||||||| ||||||||||||||||| || || ||||||||||||| ||| ||||
Sbjct 959 GTGCTGGTCTTCTCGGCTGGAAATTTGTCTTTCTCAATGACCTCACGGTGA-AAAGCGAG 1017
Query 1044 CTT-CCAAGCAAATTCAAGGCCTACAGATTCCAGCAACATAGGTGGTCCTGTGGCCCGGC 1102
|| |||||||| || ||||||| ||||||||||||||| | ||||| ||||| || ||
Sbjct 1018 -TTACCAAGCAAGTTTAAGGCCTTTAGATTCCAGCAACATCGATGGTCTTGTGGTCCAGC 1076
Query 1103 GAATCTATTTAGAAAAATGACGATGGAGATCATTCGTAATAAGAGAGT-ATCAATATGGA 1161
||||| || || ||||||| |||||||| ||||| ||||||||||| | | || ||||
Sbjct 1077 TAATCTCTTCAGGAAAATGATTATGGAGATTATTCGCAATAAGAGAGTGA-CGATTTGGA 1135
Query 1162 AGAAGTTCTATGTGATCTACAGCTT-TTTCTTCGTA-AGAAAAGTGGCAGTACACTTCTT 1219
||||||| ||| || |||||||||| ||| ||| || ||| | | ||| |||| |||
Sbjct 1136 AGAAGTTGTATCTGGTCTACAGCTTCTTT-TTCTTACGGAAGA-TCATAGTCCACTGCTT 1193
Query 1220 GACATTCT-TCTTCTACTGTATAATTGTGCCAACAAGTGTCTTC-TTCCCTGAAATCTAC 1277
|| || | | ||||||||| | ||| | || |||||||||||| ||||| ||| || ||
Sbjct 1194 CAC-TTTTATTTTCTACTGTGTTATTCTTCCTACAAGTGTCTTCTTTCCC-GAAGTCAAC 1251
Query 1278 ATCCCATCTTGGTCTACCATTTACATTCCCTCTTTGATCACTATCTTCCA-CACCATGGC 1336
|| ||| ||||||| || |||||||||||||| |||||||| || | || ||| ||
Sbjct 1252 ATTCCAGCTTGGTCAACTTTTTACATTCCCTCTATGATCACTCTC-TGCATTGTCATTGC 1310
Query 1337 AACTCCAAGATCCTTCTACCTCGTGATATTTTGGATCTTGTTCGAGAATGTAATGGCTAT 1396
|| |||||||| ||||||||||||||||||||||||||||| || || |||||| ||||
Sbjct 1311 GACACCAAGATCATTCTACCTCGTGATATTTTGGATCTTGTTTGAAAACGTAATGTCTAT 1370
Query 1397 GCATCGAACCAAAGGAACGTGCATTGGCCTACTTGAAGGAGGAAGAGTGAACGAATGGGT 1456
||| || || |||||||| | ||| ||| |||| ||| || ||||||||||||||||||
Sbjct 1371 GCACCGGACAAAAGGAACTTTCATCGGCATACTCGAAAGACAAAGAGTGAACGAATGGGT 1430
Query 1457 TGTGACCGAAAAATTAGGAGATGCT-TTAAAGAATAAGCTACTCTCGC-AGG-TCGTCCA 1513
||| || || ||||||||||||||| |||| || ||||||||| || | ||| | | |
Sbjct 1431 TGTCACTGAGAAATTAGGAGATGCTCTTAA-GACTAAGCTACT-TC-CTAGGATTGGAAA 1487
Query 1514 A---AGGAA-ATCTTGT-TATGAGAGAGTGAATTCAAAGGA-AGTGATGGTGGGGGTGTA 1567
| || || || || | | ||| ||||| || || ||||| | | ||||||||| | ||
Sbjct 1488 ACCTAGTAACATGTT-TCT-TGAAAGAGTAAACTCCAAGGAGA-TAATGGTGGGGATATA 1544
Query 1568 CATATTAG-GATGTGCACT-CTATGGCCTGATCTATGGCCACACATGGTTACATTTCTAT 1625
||| || | | ||||| | |||||| || ||| ||| |||||| |||| || |||||
Sbjct 1545 CATCTT-GTGTTGTGCT-TGCTATGGACTTTTCTTTGGGAACACATTGTTATATCTCTAT 1602
Query 1626 CT 1627
||
Sbjct 1603 CT 1604
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84136113420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5