BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946585
Length=296
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16265.1 | Symbols: NRPB9B, NRPD9B, NRPE9B | RNA polymerases... 147 8e-35
> AT4G16265.1 | Symbols: NRPB9B, NRPD9B, NRPE9B | RNA polymerases
M/15 Kd subunit | chr4:9202352-9204078 REVERSE LENGTH=625
Length=625
Score = 147 bits (79), Expect = 8e-35
Identities = 95/103 (92%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 24 GGAAGACAAGGAGCAGTCGATTCTACTCTACGCATGCCGTAATTGTGATCACCAGGAAGC 83
||||||||||||||| || || || ||||| || ||||||||||||||||||||||||||
Sbjct 154 GGAAGACAAGGAGCAATCAATCCTCCTCTATGCGTGCCGTAATTGTGATCACCAGGAAGC 213
Query 84 AGCGGATAACAACTGTGTTTACAGAAACGAGGTTCATCACTCT 126
||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 214 AGCAGATAACAATTGTGTTTACAGAAACGAGGTTCATCACTCT 256
Score = 139 bits (75), Expect = 1e-32
Identities = 88/94 (94%), Gaps = 2/94 (2%)
Strand=Plus/Plus
Query 202 GCTAAAGGCGAAGAAGGAATGACTCTGTTTTTCGTTTGCTACAACCCGAACTGTAGTCAC 261
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 374 GCTAGAGGCGAAGAAGGAATGACTCTGTTTTTCGTTTGCTGCAACCCGAACTGTAGTCAC 433
Query 262 CGTTGGAGAGAATAGAACT-ATAGAAGATTACAT 294
|||||||||||||||| | |||||||| |||||
Sbjct 434 CGTTGGAGAGAATAGAT-TGATAGAAGACTACAT 466
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13672827728
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5