BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946588
Length=483
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16566.1 | Symbols: HINT4 | histidine triad nucleotide-bindi... 758 0.0
> AT4G16566.1 | Symbols: HINT4 | histidine triad nucleotide-binding
4 | chr4:9334622-9335968 REVERSE LENGTH=776
Length=776
Score = 758 bits (410), Expect = 0.0
Identities = 457/480 (95%), Gaps = 1/480 (0%)
Strand=Plus/Plus
Query 5 TCCAAACGTAAGAATAATGGCGGGAGCGAATCAGGCGTGTATCTTCTGTGAGATCGTGCG 64
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 69 TCCAAACGTAAGAATTATGGCGGGAGTGAATCAGGCGTGTATCTTCTGTGAGATCGTGCG 128
Query 65 AAATCCAACCACCACTCGTCTCCTTCACACCGATGAGAAAGTCATCGCCTTTCAAGATAT 124
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 129 AAATCCAACCACTACTCGTCTCCTTCACACCGATGAGAAAGTCATCGCCTTTCAAGACAT 188
Query 125 CAAACCTGCCGCCCAGAGGCACTATTTGGTGATTCCAAAAGAACACATTCCTACTGTGAA 184
||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 189 CAAGCCTGCAGCCCAGAGGCACTATTTGGTGATTCCAAAAGAACATATTCCTACTGTGAA 248
Query 185 TGACCTTGAGATAAGAGATGAAGACTACTCACTTGTAAGACTCATGCTTAATGTGGGACA 244
||||||| ||| ||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 249 TGACCTTCAGAGAAGAGATGAAGACTACTCACTTGTAAGACACATGCTTAGTGTGGGACA 308
Query 245 AGAACTGTTGCAGAAAGATGCTCCTCAAAGCATTCATAGATTTGGTTTTCACCAGCCGCC 304
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 309 ACAACTGTTGCAGAAAGATGCTCCTCAAAGCATTCATAGATTTGGTTTTCACCAGCCACC 368
Query 305 ATTTAACAGTGTTGATCATCTCCATCTCCACTGTTTTGCATTACCTTTTGTGCCCAGATG 364
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 369 ATTTAACAGTGTTGATCATCTCCATCTCCACTGTTTTGCATTGCCTTATGTGCCCAGATG 428
Query 365 GAAAGCCATCAAGTACAAGTCTTTGGGACCTTTGGGTGGATTTATTGAAGCAGAGACACT 424
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 429 GAAAGCCATCAAGTACAAGTCTTTGGGACCTTTGGGTGGATTTATTGAAGCCGAGACACT 488
Query 425 GCTGGAGAAGATAAGGCCTCTTCTTTCAAAGGTGTAACTCTACC-AACTTACGTAACCGC 483
||| ||||||||||||||||||||||||||||||||||| ||| ||||| |||||||
Sbjct 489 GCTAGAGAAGATAAGGCCTCTTCTTTCAAAGGTGTAACTGAACCCAACTTGTTTAACCGC 548
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23007239326
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5