BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946589
Length=1542
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16563.1 | Symbols: | Eukaryotic aspartyl protease family p... 2466 0.0
> AT4G16563.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr4:9329657-9331523 REVERSE LENGTH=1867
Length=1867
Score = 2466 bits (1335), Expect = 0.0
Identities = 1482/1552 (95%), Gaps = 14/1552 (1%)
Strand=Plus/Plus
Query 1 CTCCACTGTTTTATCATCCGCCATGAAAACTTGTTTGATCTTCTTCCTCTACACAACAAT 60
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 70 CTCCACTGTTTTATTATCCACCATGAAAACTTGTTTGATCTTCTTCCTCTACACAACAAT 129
Query 61 TCT-CAATTACTGTTTCTACTTCTCTGT-T--TCATCATCAACAcctcttctactacc-t 115
||| ||| |||| |||| |||||||||| | |||| ||||||||||||||| || || |
Sbjct 130 TCTCCAA-TACTATTTCCACTTCTCTGTGTCATCATTATCAACACCTCTTCTCCT-CCAT 187
Query 116 ctctctcactctctctcaacctcaaaacactcttcatctcctctccaccttctcaaatca 175
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 CTCTCCCACTCTCTCTCAACCTCAAAACACTCTTCATCTCCTCTCCACCTTCTCAAATCA 247
Query 176 tcctcctccCGTTCCTCCGCCCGCTTCCGCCGCCACCACCACAAAC-AC--CAACAACAA 232
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 248 TCCTCCTCCCGTTCCTCCGCCCGCTTCCGCCGCCACCACCACAAACAACAACAACAACAA 307
Query 233 CTTTCACTCCCTATctcctccggcagcgattacctcatctccctctccgtcggctcctcc 292
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 308 CTTTCACTCCCTATCTCCTCCGGCAGCGATTATCTCATCTCCCTCTCCGTCGGCTCCTCC 367
Query 293 tcctcagccgtctccctcTACTTAGACACCGGAAGCGACCTCGTCTGGTTCCCTTGCCGT 352
||||||||||||||| | ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 368 TCCTCAGCCGTCTCCTTGTACTTGGACACCGGAAGCGACCTCGTTTGGTTCCCTTGCCGT 427
Query 353 CCTTTCACTTGCATCCTCTGTGAATCCAAACCActccctccttctcctccaccctctctc 412
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 428 CCTTTCACTTGCATCCTCTGTGAATCCAAACCACTCCCTCCTTCTCCTCCTTCATCTCTC 487
Query 413 tcctcctccgccaccaccgtctcctgctcctccccttcttgctccgccgctcactctTCC 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 TCCTCCTCCGCCACCACCGTCTCCTGCTCCTCCCCTTCTTGCTCCGCCGCTCACTCTTCC 547
Query 473 CTTCCTTCCTCCGACCTCTGCGCTATCTCCAACTGTCCTCTTGATTACATCGAAACCGGT 532
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 548 CTTCCCTCCTCCGACCTCTGCGCTATCTCCAACTGTCCTCTTGATTTCATCGAAACCGGA 607
Query 533 GATTGCAACACTTCTTCTTACCCTTGTCCTCCTTTCTACTACGCTTACGGTGACGGctct 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 GATTGCAACACTTCTTCTTACCCTTGTCCTCCTTTCTACTACGCTTACGGTGACGGCTCT 667
Query 593 ctcgtcgcaaaactcttctccgactcactctctctcccttccgtctccGTCGCTAACTTC 652
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 668 CTCGTCGCAAAACTCTACTCCGACTCACTCTCTCTCCCTTCCGTCTCCGTCTCTAACTTC 727
Query 653 ACCTTCGGCTGCGCTCACACCACTCTCGCTGAACCTATCGGCGTCGCTGGATTCGGCCGT 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 ACCTTCGGCTGCGCTCACACCACTCTCGCTGAACCTATCGGCGTCGCTGGATTCGGCCGT 787
Query 713 GGACGtctctctcttcccgctcagctctctgttcactctcctcatctcggtaacagcttc 772
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 788 GGACGTCTCTCTCTTCCCGCTCAGCTCGCTGTTCACTCTCCTCATCTCGGTAATAGCTTC 847
Query 773 tctTATTGTCTCGTCTCTCACTCGTTTGACTCAGACCGAGTCCGCCGTCCGAGTCCACTC 832
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 848 TCTTATTGTCTCGTCTCTCACTCTTTTGACTCGGACCGAGTCCGCCGTCCGAGTCCGCTC 907
Query 833 ATACTCGGCCGTTTCGTCGATAAAAAAGAGAAACGTGTTGCAACCACCgatgatgatgat 892
|| ||||| || |||||||||||||||||||||||||| | ||||||||||||| |||||
Sbjct 908 ATCCTCGGTCGCTTCGTCGATAAAAAAGAGAAACGTGTCGGAACCACCGATGATCATGAT 967
Query 893 gatggtgatga-GACGAAGAAGAAGAAGAATGAATTCGTCTTCACCGAGATGCTTGAAAA 951
|| |||||||| || |||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 968 GACGGTGATGATGA-GAAGAAGAAGAAAAATGAGTTCGTCTTCACAGAGATGCTTGAAAA 1026
Query 952 CCCAAAGCATCCTTACTTCTACTCTGTTTCACTCCAAGGAATCTCAATCGGAAAACGGAA 1011
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 CCCAAAGCATCCCTACTTCTACTCTGTTTCACTCCAAGGAATCTCAATCGGAAAACGGAA 1086
Query 1012 TATTCCTGCTCCGGCGATGCTCAGACGAATTGACAAAAACGGTGGCGGAGGAGTTGTTGT 1071
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1087 TATTCCAGCTCCGGCGATGCTCAGAAGAATTGACAAAAACGGTGGCGGAGGAGTTGTTGT 1146
Query 1072 TGACTCAGGGACGACGTTCACGATGCTTCCGGCGAAATTCTACAATTCGGTGGTTGAAGA 1131
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 TGACTCAGGGACAACGTTCACGATGCTTCCGGCGAAATTCTACAATTCGGTGGTTGAAGA 1206
Query 1132 ATTCGATAGTCGGGTCGGGCGGGTTCACGAACGGGCTGATCGGGTCGAACCGAGTTCGGG 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1207 ATTCGATAGTCGGGTCGGGCGGGTTCACGAACGGGCTGATCGGGTCGAACCGAGTTCGGG 1266
Query 1192 TATGAGTCCTTGTTACTATTTAAACCAGACGGTTAAAGTTCCAGCTCTGGTTTTGCATTT 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 TATGAGTCCTTGTTACTATTTAAACCAGACGGTTAAAGTTCCAGCTCTGGTTTTGCATTT 1326
Query 1252 TGCCGGGAATGGATCCAGTGTTACGCTCCCTAGGAGAAATTATTTTTATGAATTTATGGA 1311
||||||||| |||||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 1327 TGCCGGGAACAGATCCAGTGTGACGCTCCCCAGGAGAAATTATTTTTACGAATTTATGGA 1386
Query 1312 CGGTGGAGATGGTAAAGAAGAGAAGAGGAAAGTTGGATGTTTGATGTTGATGAACGGTGG 1371
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1387 CGGTGGAGATGGTAAAGAAGAGAAGAGGAAAATTGGATGTTTGATGTTGATGAACGGTGG 1446
Query 1372 AGATGAATCGGAGCTTCGAGGTGGGACTGGGGCTATTCTGGGGAATTACCAGCAACAAGG 1431
||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1447 AGATGAATCAGAACTTCGAGGTGGTACTGGGGCTATTCTGGGGAATTACCAGCAACAAGG 1506
Query 1432 GTTTGAGGTGGTCTATGATCTGTTGAACAGAAGAGTTGG-TTTCGCAAAGAGGAAATGCG 1490
|||||||||||| |||||||||||||||||||||||||| ||| || |||||||| ||||
Sbjct 1507 GTTTGAGGTGGTTTATGATCTGTTGAACAGAAGAGTTGGGTTT-GCTAAGAGGAAGTGCG 1565
Query 1491 CATCTTTATGGGATACGCTTAACCAGGGCTAACATGCGCTGAAGCCAATAAA 1542
|||||||||||||| ||||||| | | ||||||||||||||||||||||||
Sbjct 1566 CATCTTTATGGGATTCGCTTAAATAAGCCTAACATGCGCTGAAGCCAATAAA 1617
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76104026220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5