BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946595
Length=649
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03020.1 | Symbols: | Heat shock protein HSP20/alpha crysta... 527 5e-149
AT4G16540.1 | Symbols: | Heat shock protein HSP20/alpha crysta... 335 3e-91
AT4G16550.1 | Symbols: | HSP20-like chaperone | chr4:9318442-9... 265 5e-70
> AT2G03020.1 | Symbols: | Heat shock protein HSP20/alpha crystallin
family | chr2:882645-884148 REVERSE LENGTH=1117
Length=1117
Score = 527 bits (285), Expect = 5e-149
Identities = 334/358 (93%), Gaps = 2/358 (1%)
Strand=Plus/Plus
Query 276 GATCTCCGTGGCACCGATCCAAATGACCCGGCGTTAACCGGTCCGGTATTGCAGCCACAT 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 GATCTCCGTGGCACCGATCCAAATGACCCGGCGTTAACCGGTCCGGTATTGCAGCCACAT 544
Query 336 CCAATGGCGTTCCCACTAAC-GACTATGGCTTATGAGTCGAAGCAGCTCCCAGACGGCAA 394
||| | |||||||||| ||| ||||||||| ||||||||||||||||||||| |||||||
Sbjct 545 CCACTTGCGTTCCCAC-AACCGACTATGGCCTATGAGTCGAAGCAGCTCCCAAACGGCAA 603
Query 395 ACTATACGTGCGTGTAGACATGCCGGGTGTTCCCAGTGACAACTTCACTGTCTCTGTCAC 454
||||| |||||||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct 604 ACTATTCGTGCGTGCAGACATGCCGGGTGTTCCCAAAGAAAACTTCACTGTCTCTGTCAC 663
Query 455 GAATGGGCGAGTGAAGGTGACTGGTGAAGCTCCTGCCGTTGGCCACCACTCAAGTGGCCG 514
|||||||||||| |||||||||||| |||||||||| ||| |||| | |||||||||||
Sbjct 664 GAATGGGCGAGTCAAGGTGACTGGTCAAGCTCCTGCGGTTAGCCATGATTCAAGTGGCCG 723
Query 515 TTTCTACTCTGGTGACGTTGCTATGCTCTCCACTCCTGTTGACATTCCCAGCCATCGGAT 574
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 724 TTTCTACTCTGGTGACGTCGCTATGCTCTCCACTCCTGTTGACATTCCCAGCCGTCGGAT 783
Query 575 CGAGACCATCGCCAAGAACGGTGTGATTGGTCTCCTTATCCCTCCATTTTGCTGATGA 632
| |||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||
Sbjct 784 CAAGACCATCGCCAAGAACGGTGTCATTCGTCTCCTTATCCCTCCATTTTGATGATGA 841
Score = 237 bits (128), Expect = 1e-61
Identities = 169/189 (89%), Gaps = 1/189 (1%)
Strand=Plus/Plus
Query 1 CTTGAATCTTTGGTTGAATCATGGCAATGGCCGTTCCTCTTAGTACTCCTCCTCAATCTC 60
|||| | |||| |||||||||||||||||||||||||| ||||| ||| |||||| ||||
Sbjct 49 CTTGTACCTTT-GTTGAATCATGGCAATGGCCGTTCCTGTTAGTGCTCGTCCTCAGTCTC 107
Query 61 CCGAAGGTTTTTACGCAATCAACAACCAGTTTCTGACGTCTGGGCCAAAAGGGTTCACTG 120
||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||
Sbjct 108 CCGAAGGTTTTTACGCAATCAACAACCAGTTTCAGACGAATGGGCCAAAAGGGTTCTCTG 167
Query 121 AGTTCAAGATGCTGGTAAATGAAGACATGTTCGTGAGAATGGATTTGCCTGGAGTTCCTG 180
|| ||||||| || | || |||||||||||| |||| ||||||||||||||||||||||
Sbjct 168 AGATCAAGATTCTAGCGAACGAAGACATGTTCTTGAGGATGGATTTGCCTGGAGTTCCTG 227
Query 181 AAGAAGGCG 189
| |||||||
Sbjct 228 ATGAAGGCG 236
> AT4G16540.1 | Symbols: | Heat shock protein HSP20/alpha crystallin
family | chr4:9316023-9317153 REVERSE LENGTH=699
Length=699
Score = 335 bits (181), Expect = 3e-91
Identities = 227/249 (91%), Gaps = 4/249 (2%)
Strand=Plus/Plus
Query 379 AGCTCCCAGACGGCAAACTATACGTGCGTGTAGACATGCCGGGTGTTCCCAGTGACAACT 438
|||||||| |||||||||||| |||||||| ||||||||| |||||||||| || ||||
Sbjct 452 AGCTCCCAAACGGCAAACTATTCGTGCGTGCAGACATGCCTGGTGTTCCCAAAGAAAACT 511
Query 439 TCACTGTCTCTGTCACGAATGGGCGAGTGAAGGTGACTGGTGAAGCTCCTGCCGT-TG-G 496
|||||||||||||||||||||||||||| |||||||||||||||||||||| | | || |
Sbjct 512 TCACTGTCTCTGTCACGAATGGGCGAGTCAAGGTGACTGGTGAAGCTCCTG-C-TCTGAG 569
Query 497 CCACCACTCAAGTGGCCGTTTCTACTCTGGTGACGTTGCTATGCTCTCCACTCCTGTTGA 556
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 570 CCATGACTCAAGTGGCCGTTTCTACTCTGGTGACGGCGCTATGCTCTCCACTCCTGTTGA 629
Query 557 CATTCCCAGCCATCGGATCGAGACCATCGCCAAGAACGGTGTGATTGGTCTCCTTATCCC 616
||||||||||| | ||||| |||||||||||||| ||||||| ||| |||||||||||||
Sbjct 630 CATTCCCAGCCGTAGGATCAAGACCATCGCCAAGGACGGTGTCATTCGTCTCCTTATCCC 689
Query 617 TCCATTTTG 625
|||||||||
Sbjct 690 TCCATTTTG 698
Score = 207 bits (112), Expect = 8e-53
Identities = 146/163 (90%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 27 ATGGCCGTTCCTCTTAGTACTCCTCCTCAATCTCCCGAAGGTTTTTACGCAATCAACAAC 86
||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCGTTCCTCTTCCTGCTCGTCCTCAATCTCCCGAAGGTTTTTACGCAATCAACAAC 60
Query 87 CAGTTTCTGACGTCTGGGCCAAAAGGGTTCACTGAGTTCAAGATGCTGGTAAATGAAGAC 146
||||||| |||| |||||||||||||||| ||||| ||||||| || | || | ||||
Sbjct 61 CAGTTTCAGACGAATGGGCCAAAAGGGTTCTCTGAGCTCAAGATTCTAGCGAACGGAGAC 120
Query 147 ATGTTCGTGAGAATGGATTTGCCTGGAGTTCCTGAAGAAGGCG 189
||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 121 ATGTTCGTGAGGATGGATTTGCCTGGAGTTCCTGATGAAGGCG 163
> AT4G16550.1 | Symbols: | HSP20-like chaperone | chr4:9318442-9324254
REVERSE LENGTH=2232
Length=2232
Score = 265 bits (143), Expect = 5e-70
Identities = 222/261 (85%), Gaps = 2/261 (1%)
Strand=Plus/Plus
Query 360 ATGGCTTATGAGTCGAAGCAGCTCCCAGACGGCAAACTATACGTGCGTGTAGACATGCCG 419
|||||||||||||| |||||||| | | |||| |||||||||||||||||||||||
Sbjct 1966 ATGGCTTATGAGTCCAAGCAGCTTCAAAACGGTGGTCTATACGTGCGTGTAGACATGCCA 2025
Query 420 GGTGTTCCCAGTGACAACTTCACTGTCTCTGTCACGAATGGGCGAGTGAAGGTGACTGGT 479
|| ||||||| || |||||||||||| | |||| ||||||| |||||| |||||| |||
Sbjct 2026 GGCGTTCCCAAAGAGAACTTCACTGTCGCAGTCATGAATGGGAGAGTGAGGGTGACCGGT 2085
Query 480 GAAGCTCCTGCCGTTGGCCACCACTCAAGTGGCCGTTTCTACTCTGGTGACGTTGCTATG 539
|||||||||||| || ||||| |||||||||| ||||||||| |||||||||||||||||
Sbjct 2086 GAAGCTCCTGCCATTAGCCACGACTCAAGTGGACGTTTCTACACTGGTGACGTTGCTATG 2145
Query 540 CTCTCCACTCCTGTT-GACATTCCCAGCCATCGGATCGAGACCATCGCCAAGAACGGTGT 598
|||||||||||| || |||||||||| || | |||| ||| ||| || |||||||||||
Sbjct 2146 CTCTCCACTCCT-TTCGACATTCCCATCCGTAAGATCAAGATCATTGCTAAGAACGGTGT 2204
Query 599 GATTGGTCTCCTTATCCCTCC 619
||| |||| | ||||||||
Sbjct 2205 CATTCGTCTGATCATCCCTCC 2225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31346107728
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5