BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946605

Length=409
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G16520.1 | Symbols: ATG8F | Ubiquitin-like superfamily prote...   628    9e-180


> AT4G16520.1 | Symbols: ATG8F | Ubiquitin-like superfamily protein 
| chr4:9306663-9308462 REVERSE LENGTH=713
Length=713

 Score =  628 bits (340),  Expect = 9e-180
 Identities = 381/401 (95%), Gaps = 2/401 (0%)
 Strand=Plus/Plus

Query  11   AGGCGTGGAAGGAATGGCTAAAAGCTCCTTTAAGCAAGAGCATGACCTAGAGAAGAGAAG  70
            |||||||||||||||||| |||||||| || ||||||||||||||| |||||||||||||
Sbjct  116  AGGCGTGGAAGGAATGGCAAAAAGCTCGTTCAAGCAAGAGCATGACTTAGAGAAGAGAAG  175

Query  71   GGCGGAGGCTGCTCGGATTAGAGACAAGTATCCTGATAGGATTCCGGTGATTGTTGAGAA  130
            ||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  176  GGCAGAGGCTGCTAGGATTAGAGAGAAGTATCCTGATAGGATTCCGGTGATTGTTGAGAA  235

Query  131  GGCTGAGAAGAGTGATATACCAACCATCGACAAGAAAAAATACCTAGTCCCGGCTGATCT  190
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  236  GGCTGAGAAGAGTGATATACCAACCATCGACAAGAAAAAGTACCTAGTCCCGGCTGATCT  295

Query  191  GACTGTGGGGCAATTTGTGTATGTTATTCGCAAAAGAATCAAATTAAGTGCAGAAAAGGC  250
            |||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct  296  GACTGTGGGGCAGTTTGTGTATGTCATTCGCAAAAGAATCAAATTGAGTGCAGAAAAGGC  355

Query  251  TATCTTCATATTTGTGGACAACGTTCTTCCCCCAACAGGTGCGCTCATGTCTTCCGTGTA  310
            |||||||||||| |||||||| |||||||| ||| ||||||||||||||||||| |||||
Sbjct  356  TATCTTCATATTCGTGGACAATGTTCTTCCTCCAGCAGGTGCGCTCATGTCTTCTGTGTA  415

Query  311  CGAAGAGAAAAAGGATGATGATGGGTTCCTCTATGTCACTTACAGCGGAGAAAACACATT  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  416  CGAAGAGAAAAAGGATGATGATGGGTTCCTCTATGTCACTTACAGCGGAGAAAACACATT  475

Query  371  TGGATTTGGATCTCCATAATAGAT-C-TCTTACTGGATATT  409
            |||||||||||||||||||||||  | |||| |||||||||
Sbjct  476  TGGATTTGGATCTCCATAATAGAGACCTCTTGCTGGATATT  516



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19353083365


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5