BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946608
Length=727
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16510.1 | Symbols: | YbaK/aminoacyl-tRNA synthetase-associ... 1110 0.0
> AT4G16510.1 | Symbols: | YbaK/aminoacyl-tRNA synthetase-associated
domain | chr4:9302798-9305047 FORWARD LENGTH=895
Length=895
Score = 1110 bits (601), Expect = 0.0
Identities = 688/730 (94%), Gaps = 6/730 (1%)
Strand=Plus/Plus
Query 1 TTCGAAATGGAAGACGGAGAAGGCATGGAGGCTGCAGCGGCGGAGCTTGAGAGACTCCAA 60
||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 13 TTCGAAATGGACGACGGAGAAGGCATGGAAACTGCAGCGGCAGAGCTTGAGAGACTCCAA 72
Query 61 ATTGAAATCCTCCATAGAATCTCTGTCCTCGAGAGCTCTTTTCTCCCACAGAACTCCTCC 120
|||||||||||||| | |||||| | || ||||||||||||||||||||||| |||||
Sbjct 73 ATTGAAATCCTCCACAAAATCTCCATTCTTGAGAGCTCTTTTCTCCCACAGAATTCCTCT 132
Query 121 GCGGCTCCGTCGTCTTCTCTACCAGTTGATGAAAACGAAACTGTGACTCGCCTCTCCACC 180
|| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 133 GCTGCTCCGTCGCCTTCTCTACCGGTTGATGAAAACGAAACTGTGACTCGCCTCTCCACC 192
Query 181 ATTCTCCGGTCTGGCGGCGTTAACGATTTCTGCTTCAAGAGAGTTGCTCCCGATTACTAT 240
||||||| ||| |||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 193 ATTCTCCAGTCCGGCGGCGTTAACGACTTCTGCTTCAAGAGAGTTGCTACCGATTACTAT 252
Query 241 GACTGGCCTCTCGAATCTCGTCGCGACGCTCTCGGCGCTTCCTCAGTCGACCATCTCTGC 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 253 GACTGGCCTCTCGAATCTCGTCGCGACGTTCTCGGCGCTTCCTCAGTCGACCATCTCTGC 312
Query 301 AAGAGCATTGTTCTGGTTAATACTCAAGCTTCATCAAATATTTTGGATTGCAGTGATCGC 360
||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 313 AAGAGTATTGTTCTGGTTAATACTCAAGCTGCATCAAATATTTTGGATTGCAGTGATC-C 371
Query 361 -AACAACTCAAAATACTATGTGGTTGTGGTTCAGTATACTGCTAGATTCAATGCTGAAGC 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 AAACAACTCAAAATACTATGTGGTTGTGGTTCAGTATACTGCTAGATTCAATGCTGAAGC 431
Query 420 AGTGAAGCAGTTTCTTTATTCACTAAACGAGGGCAAGATCCCAAAGAAAAGATTTAA-CT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 432 AGTGAAGCAGTTTCTTTATTCACTAAACGAGGGCAAGATCCCAAAGAAAAGATTTAATCT 491
Query 479 TGAGACTTGCTCCTGAGGAGACGTCGATTAAATTGACAGGGTTTGAGCACAATGCCGTAA 538
|||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||
Sbjct 492 -GAGACTTGCTCCTGAGGAGACGTCGATTAAATTGACGGGGTTTGAGCATAATGGGGTAA 550
Query 539 CCTGTATTGGTATGAAGACAAACATACCGGTGATATTGGATGAGGCCATAACCAAACTTA 598
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 551 CCTGTATTGGTATGAAGACAAACATACCGGTTATATTGGATGAGGCTATAACCAAACTTA 610
Query 599 AACCAGACTTCTTCTGGTTAGGTGGTGGAGAAATCGATCTGAAGCTCGGTGTTAGAACAT 658
|||| || ||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 611 AACCGGATTTCTTCTGGTTGGGTGGTGGAGAAATCGATCTGAAGCTCGGTGTCAGAACAT 670
Query 659 CTGAATTCCTTGAATTTGTGAAACCATTCATCGTTCCTTGCAGCTGAACTCAGGAATAT- 717
| ||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||
Sbjct 671 CCGAATTCCTTGAATTTGTGAAACCATTCATTGTTCCTTGCAGTTGAAATCAGGAATATG 730
Query 718 TCATAACACT 727
| ||||||||
Sbjct 731 T-ATAACACT 739
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35264371194
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5