BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946617
Length=363
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16450.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 584 2e-166
> AT4G16450.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: photorespiration; LOCATED
IN: mitochondrion, mitochondrial membrane, mitochondrial
respiratory chain complex I, respiratory chain complex I, membrane;
EXPRESSED IN: 25 plant structures; EXPRESSED DURING:
15 growth stages; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink). | chr4:9280074-9280718 FORWARD
LENGTH=556
Length=556
Score = 584 bits (316), Expect = 2e-166
Identities = 345/358 (96%), Gaps = 6/358 (2%)
Strand=Plus/Plus
Query 12 TCGATCGAAGATGAATACTGACATCACTGCCTTGGAGAAGCCACAATACCCAGTCGTTGA 71
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 49 TCGATCGAAGATGAATACTGACATCACTGCCTTGGAGAAGGCACAATACCCAGTGGTTGA 108
Query 72 TCGGAATCCTGCTTTTACTAAAGTCGTCGGCAATTTCAGCACTCTCGATTACCTCCGATT 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 109 TCGGAATCCTGCTTTTACTAAAGTCGTCGGCAATTTCAGCACTCTCGATTACCTCCGTTT 168
Query 132 CTCTACTATCACCGGCATCTCCGTCACCGTCGGCTATCTCTCTGGGATTAAGCCTGGGAT 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 CTCTACTATCACCGGCATCTCCGTCACCGTCGGCTATCTCTCTGGGATTAAGCCTGGGAT 228
Query 192 TAAGGGACCGTCAATGGTTACTGGAGGATTGATCGGACTCATGGGAGGTTTCATGTATGC 251
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 229 TAAGGGACCGTCGATGGTTACTGGAGGATTGATCGGGCTCATGGGAGGTTTCATGTATGC 288
Query 252 GTACCAGAACTCTGCGGGTAGACTCATGGGGTTTTTCCCTAATGATGGTGAGGTTGCTAG 311
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 289 GTACCAGAACTCTGCCGGTAGACTCATGGGGTTTTTCCCTAATGATGGTGAAGTTGCTAG 348
Query 312 TTACCAGAAGCGTGGTGGTTTCTCCAAATGA----CTTTAG-GTTT-ATTTTCTGGAT 363
||||||||||||||||||||||||||||||| |||||| |||| |||||||||||
Sbjct 349 TTACCAGAAGCGTGGTGGTTTCTCCAAATGAATGACTTTAGTGTTTTATTTTCTGGAT 406
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17040766911
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5