BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946620

Length=591
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G16442.1 | Symbols:  | Uncharacterised protein family (UPF04...   907    0.0  


> AT4G16442.1 | Symbols:  | Uncharacterised protein family (UPF0497) 
| chr4:9271856-9273089 REVERSE LENGTH=854
Length=854

 Score =  907 bits (491),  Expect = 0.0
 Identities = 550/579 (95%), Gaps = 1/579 (0%)
 Strand=Plus/Plus

Query  13   CAGCAGCAAGATGAAGCTAATTGATCGAAGACTGAAGTTAACGGAGCTGCTCTTACGATG  72
            ||| |||||||||||| |||| ||||||||| ||| ||||||||||||||||||||| ||
Sbjct  110  CAGAAGCAAGATGAAGTTAATAGATCGAAGAATGAGGTTAACGGAGCTGCTCTTACGGTG  169

Query  73   CTCCATCAGCGTCTTCGCTCTTCTCGCGCTTATTCTGGTTGTTACAGACACTGAGGTCAA  132
            ||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct  170  CTCCATCAGTGTCTTCGCTCTCCTCGCGCTTATTCTAGTTGTGACAGACACTGAGGTCAA  229

Query  133  GCTAATCTTCACTATCAAGAAGACGGCCAAGTACACCGACATGAAGGCGGTTGTGTTCTT  192
            ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  230  GCTTATCTTCACTATCAAGAAGACGGCCAAGTACACGGACATGAAGGCGGTTGTGTTCTT  289

Query  193  GGTGGTGGCTAATGGGATAGCTGCGGTTTATTCTTTGTTACAATCAGTTCGTTGCGTGGT  252
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  290  GGTGGTGGCTAATGGGATAGCTGCGGTTTATTCTTTGTTGCAATCAGTTCGTTGCGTGGT  349

Query  253  GGGTACGATGAAAGGAAGGGTTTTGTTTAGTAAGCCTCTTGCTTGGGCCTTTTTCTCTGG  312
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  350  GGGTACGATGAAAGGAAAGGTTTTGTTTAGTAAGCCTCTTGCTTGGGCCTTTTTCTCTGG  409

Query  313  TGATCAGGCGATGGCGTACTTGAATGTGGCGGCCATTGCAGCAACAGCAGAGTCTGGTGT  372
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  410  TGATCAGGCGATGGCGTACTTGAATGTGGCAGCCATTGCAGCAACAGCAGAGTCTGGTGT  469

Query  373  GATTGCAAGAGAAGGAGAGGAAGATTTGCAATGGATGAGAGTGTGCAATATGTATGGCAA  432
            |||||| || ||||||||||||||||||||||||||||||||||| | ||||||||| ||
Sbjct  470  GATTGCTAGGGAAGGAGAGGAAGATTTGCAATGGATGAGAGTGTGTACTATGTATGGAAA  529

Query  433  GTTCTGCAACCAAATGGCTATAGGTGTCTCCAGCGCCTTGTTAGCCTCCATTGCTATGGT  492
            |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct  530  GTTCTGCAACCAAATGGCTATAGGAGTCTCTAGCGCCTTGTTAGCCTCCATTGCTATGGT  589

Query  493  TTTCGTCTCCTGCATTTCTGCTTTTAGTCTCTTCCGCTTGTATGGTGCCACCAAAGACCG  552
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  590  TTTCGTCTCCTGCATTTCTGCTTTTAGTCTCTTCCGCTTGTACGGTGCCACCAAAGACCG  649

Query  553  CAGAACCACACCTTGGTGAAGTTCTTGCG-CTTTGTCTT  590
            ||||||||| || |||||||||   |||| |||||||||
Sbjct  650  CAGAACCACGCCGTGGTGAAGTGAATGCGGCTTTGTCTT  688



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28432527202


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5