BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946622
Length=1447
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16430.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 2274 0.0
> AT4G16430.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:9267260-9269178 FORWARD LENGTH=1831
Length=1831
Score = 2274 bits (1231), Expect = 0.0
Identities = 1351/1411 (96%), Gaps = 0/1411 (0%)
Strand=Plus/Plus
Query 19 GAGAAATGGGTCCAAAGTTTTGGGAGAATCAAGAAGATCGAGCGATGGTTGAGTCCACCA 78
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 247 GAGAAATGGGTCAAAAGTTTTGGGAGAATCAAGAAGATCGAGCGATGGTTGAATCCACCA 306
Query 79 TAGGCTCTGAAGCTTGCGACTTTTTCATCTCAACGGCTTCAGCTTCCAACACTGCCTTGA 138
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 307 TAGGCTCTGAAGCTTGCGACTTTTTCATCTCAACAGCTTCAGCTTCCAACACTGCCTTGT 366
Query 139 CCAAGCTTGTCTCGCCGCCAAGTGATTCCAATCTCCAACAAGGGTTACGTCACGTTGTTG 198
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 CCAAGCTTGTCTCACCACCAAGTGATTCCAATCTCCAACAAGGGTTACGTCACGTTGTTG 426
Query 199 AAGGTTCTGATTGGGATTATGCTATTTTCTGGTTAGCTTCCAACGTTAATAGCTCCGATG 258
|||| |||||||||||||||||| |||||||| |||| ||||||||||||||||| ||||
Sbjct 427 AAGGATCTGATTGGGATTATGCTCTTTTCTGGCTAGCGTCCAACGTTAATAGCTCTGATG 486
Query 259 GTTGTGTCTTGATCTGGGGAGATGGTCATTGCCGTGTCAAAAAGGGTGTTTCTGGTGAGG 318
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 487 GTTGTGTCTTGATCTGGGGAGATGGTCATTGCCGTGTCAAAAAGGGTGCTTCAGGTGAGG 546
Query 319 ATTATTCGCAGCAAGATGAGACCAAAAGGCGTGTGCTTCGCAAGCTTCACTTGTCCTTTG 378
|||| || ||||||||||||| |||||| |||||||||||||||||||||||||| || |
Sbjct 547 ATTACTCTCAGCAAGATGAGATCAAAAGACGTGTGCTTCGCAAGCTTCACTTGTCGTTCG 606
Query 379 TTGGTTCAGATGAGGATCATCGTTTGGTGAAATCAGGAGCTCTTACTGATCTCGACATGT 438
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 TTGGTTCAGATGAAGATCATCGTTTGGTGAAATCAGGAGCTCTTACTGATCTCGACATGT 666
Query 439 TTTATCTGGCTTCTTTGTACTTTTCCTTTAGGTGTGATTCTAATAAGTACGGTCCTGCTG 498
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 667 TTTATCTGGCTTCTTTGTACTTTTCCTTTAGGTGTGATACCAATAAGTACGGTCCTGCTG 726
Query 499 GAACCTATGTGTCTGGGAAGCCTCTTTGGGCTGCTGACTTGCCTAGCTGCTTGAGTTATT 558
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 727 GAACCTATGTGTCTGGGAAGCCTCTTTGGGCTGCAGATTTGCCTAGCTGCTTGAGTTATT 786
Query 559 ATAGGGTTAGGTCTTTCTTGGCTAGATCTGCTGGGTTTCAGACTGTGTTGTCTGTACCAG 618
||||||||||||||||||| ||||| || ||||| |||||||||||||||||||||||||
Sbjct 787 ATAGGGTTAGGTCTTTCTTAGCTAGGTCAGCTGGTTTTCAGACTGTGTTGTCTGTACCAG 846
Query 619 TGAACTCTGGAGTTGTGGAGCTTGGTTCTTTGAGACATATTCCAGAAGATAAGAGTGTGA 678
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 847 TGAATTCTGGAGTTGTGGAGCTTGGTTCTTTAAGACATATTCCAGAAGATAAGAGTGTGA 906
Query 679 TTGAGATGGTGAAATCAGTGTTTGGTGGATCTGACTTTGTTCAGGCTAAAGAAGCTCCTA 738
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 907 TTGAGATGGTGAAATCAGTGTTTGGTGGGTCTGACTTTGTTCAGGCTAAAGAAGCTCCTA 966
Query 739 AAATCTTTGGTCGACAGCTGAGCCTTGGTGGATCGAAACCTCGGTCTATGAGTATTAATT 798
|||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||
Sbjct 967 AAATCTTTGGTCGACAGCTGAGTCTTGGTGGAGCAAAACCTCGGTCTATGAGTATTAATT 1026
Query 799 TCTCCCCCAAGACGGAGGATGACACAGGTTTCTCATTGGAATCGTATGAGGTGCAAGCGA 858
||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1027 TCTCCCCGAAGACCGAGGATGACACGGGTTTCTCATTGGAATCGTATGAGGTGCAAGCGA 1086
Query 859 TCGGAGGCTCCAATCAAGTGTATGGTTATGAGCAAGGGAAAGATGAGACATTGTATCTAA 918
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 TCGGAGGCTCTAATCAAGTGTATGGTTATGAGCAAGGGAAAGATGAGACATTGTATCTAA 1146
Query 919 CTGATGAGCAAAAGCCGAGGAAGAGAGGGAGAAAACCAGCAAATGGAAGAGAAGAGGCTT 978
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 CTGACGAGCAAAAGCCGAGGAAGAGAGGGAGAAAACCAGCAAATGGAAGAGAAGAGGCTC 1206
Query 979 TGAACCATGTGGAAGCGGAACGGCAGAGGAGGGAGAAGCTGAACCAGAGATTCTACGCAT 1038
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1207 TAAACCATGTGGAAGCGGAACGGCAGAGGAGGGAGAAGCTGAACCAGAGATTCTACGCTT 1266
Query 1039 TGAGAGCGGTGGTGCCTAACATCTCTAAGATGGACAAGGCTTCGCTCCTTGCGGATGCAA 1098
||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||
Sbjct 1267 TGAGAGCGGTGGTGCCTAACATCTCCAAGATGGACAAGGCTTCGCTCCTTGCAGACGCAA 1326
Query 1099 TCACATACATCACAGATATGCAGAAGAAAATCAGGGTATACGAAACAGAGAAGCAGATAA 1158
|||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1327 TCACTTACATCACGGATATGCAGAAGAAAATCAGGGTGTATGAAACAGAGAAGCAGATAA 1386
Query 1159 TGAAGAGGAGGGAGAGTAATCAGATAACTCCAGCAGAGGTTGATTATCAACAAAGGCAGG 1218
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1387 TGAAGAGGAGGGAGAGTAATCAGATAACTCCAGCAGAGGTTGATTATCAACAGAGGCATG 1446
Query 1219 ATGATGCAGTGGTAAGGCTAAGCTGTCCGTTGGAAACTCATCCCGTTTCAAAGGTGATAC 1278
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1447 ATGATGCAGTTGTAAGGCTAAGCTGTCCGTTGGAAACTCATCCAGTTTCAAAGGTGATAC 1506
Query 1279 AAACGTTGAGAGAGAATGAAGTTATGCCTCATGACTCTAATGTGGCTGTCACAGAGGAGG 1338
|||||||||| ||||||||||||||||||||||| || || ||||| ||||||||||||
Sbjct 1507 AAACGTTGAGGGAGAATGAAGTTATGCCTCATGATTCCAACGTGGCCATCACAGAGGAGG 1566
Query 1339 GTGTGGTTCACACATTCACTCTCCGGCCTCAGGGTGGCTGCACCGCCGAGCAGTTGAAGG 1398
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1567 GTGTGGTTCACACATTCACTCTCCGGCCTCAGGGTGGCTGCACCGCTGAGCAGTTGAAGG 1626
Query 1399 ACAAGCTCCTTGCCTCTCTATCACAGTAACT 1429
|||||||||||||||||||||||||||||||
Sbjct 1627 ACAAGCTCCTTGCCTCTCTATCACAGTAACT 1657
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71334974445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5