BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946628

Length=329
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G08230.1 | Symbols:  | Tudor/PWWP/MBT domain-containing prot...   167    7e-41
  AT4G11410.1 | Symbols:  | NAD(P)-binding Rossmann-fold superfam...  99.0    2e-20


> AT5G08230.1 | Symbols:  | Tudor/PWWP/MBT domain-containing protein 
| chr5:2641394-2649788 REVERSE LENGTH=5082
Length=5082

 Score =  167 bits (90),  Expect = 7e-41
 Identities = 104/111 (94%), Gaps = 0/111 (0%)
 Strand=Plus/Plus

Query  72   ATGGCTCTTGGGCGTAAAAGAGGAATGAACAAAGCCATGGCGATAGGAGAGCTGATATTG  131
            ||||||| ||||||||||||||||  ||||||||| ||||||||||||||| ||| ||||
Sbjct  1    ATGGCTCCTGGGCGTAAAAGAGGAGCGAACAAAGCTATGGCGATAGGAGAGATGAGATTG  60

Query  132  GGTGATCTCGTTCTTGCTAAAGTTAAAGGCTTCCCTGCTTGGCCTGCTAAG  182
            ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  61   GGTGATCTCGTTCTTGCTAAAGTTAAAGGATTCCCTGCTTGGCCTGCTAAG  111


> AT4G11410.1 | Symbols:  | NAD(P)-binding Rossmann-fold superfamily 
protein | chr4:6944918-6947333 REVERSE LENGTH=1310
Length=1310

 Score = 99.0 bits (53),  Expect = 2e-20
 Identities = 57/59 (97%), Gaps = 0/59 (0%)
 Strand=Plus/Plus

Query  1    CACAGCTGAAGAAGTCACTCATGGAATCGATGGTACTGGTCTCACAGCTATTGTCACAG  59
            ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct  195  CACAGCTGAAGAAGTCACTCATGGAATCGATGGTACTGGTCTCACTGCTATCGTCACAG  253



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15331663445


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5