BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946634
Length=817
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16360.3 | Symbols: | 5'-AMP-activated protein kinase beta-... 1314 0.0
> AT4G16360.3 | Symbols: | 5'-AMP-activated protein kinase beta-2
subunit protein | chr4:9245078-9246862 FORWARD LENGTH=1308
Length=1308
Score = 1314 bits (711), Expect = 0.0
Identities = 773/803 (96%), Gaps = 4/803 (0%)
Strand=Plus/Plus
Query 18 GCTATGTCTGCTGCTTCTGATGGTAACCATGTCGCTCCTCCTGAGCTTATGGGTCAATCT 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 GCTATGTCTGCTGCTTCTGATGGTAACCATGTCGCTCCTCCTGAGCTTATGGGTCAATCT 556
Query 78 CCTCCTCATAGTCCTCGAGCCACTCAGTCTCCTCTCATGTTTGCTCCTCAGGTTCCTGTG 137
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 557 CCTCCTCATAGCCCTCGAGCTACTCAGTCTCCTCTCATGTTTGCTCCTCAGGTTCCGGTG 616
Query 138 CTTCCACTTCAAAGACCTGATGAAATTCACATCCCGAATCCTTCTTGGATGCAATCTCCA 197
||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| |||
Sbjct 617 CTTCCACTTCAAAGACCTGATGAAATTCATATCCCTAATCCTTCGTGGATGCAATCGCCA 676
Query 198 TCTTCGT---ATGAAGAAGCTTCTAACGAGCAAGGAATCCCTACGATGATCACATGGTGC 254
||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 677 TCTTCGTTGTATGAAGAAGCTTCTAACGAACAAGGAATCCCTACGATGATCACTTGGTGT 736
Query 255 CATGGAGGCAAAGAGATTGCTGTGGAGGGATCATGGGACAATTGGAAGACAAGAAGTCGG 314
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 737 CATGGAGGCAAGGAGATTGCTGTGGAGGGATCATGGGATAATTGGAAGACAAGAAGTCGG 796
Query 315 CTACAGAGATCTGGGAAGGACTTCACAATCATGAAAGTGTTGCCTTCAGGCGTCTATGAG 374
|| ||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct 797 CTGCAGAGATCTGGGAAGGACTTCACTATCATGAAAGTGTTACCTTCAGGAGTCTATGAG 856
Query 375 TACAGGTTCATTGTGGATGGACAGTGGAGGCATGCCCCTGAGCTCCCTTTGGCTAGAGAT 434
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 857 TACAGGTTCATTGTGGATGGACAGTGGAGGCATGCCCCTGAGCTCCCTTTAGCTAGAGAT 916
Query 435 GATGCTGGAAACACTTTCAACATTTTGGATCTTCAGGACTATGTTCCTGAAGACATTCAA 494
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 917 GATGCTGGGAACACTTTCAACATTTTGGATCTTCAGGACTATGTTCCTGAAGACATTCAA 976
Query 495 AGCATATCTGGGTTTGAGCCTCCGCAATCTCCAGAGAATAGTTACAGCAACTTGCTTCTC 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 977 AGCATATCTGGGTTTGAGCCTCCGCAATCTCCAGAGAATAGTTACAGCAACTTGCTTCTC 1036
Query 555 GGAGCTGAGGATTACTCTAAAGAACCGCCTGTGGTTCCCCCTCACCTACAGATGACACTG 614
||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1037 GGAGCTGAGGACTACTCTAAAGAACCGCCTGTGGTTCCCCCGCACCTACAAATGACACTG 1096
Query 615 CTGAACTTGCCGGCAGCCAATCCTGACATTCCATCTCCGCTGCCGAGACCTCAGCATGTC 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1097 CTGAACTTGCCGGCAGCCAATCCTGACATTCCATCTCCGCTGCCGAGACCTCAGCATGTC 1156
Query 675 ATCCTCAATCATCTCTACATGCAGAAGGGCAAAAGTGGTCCTTCTGTGGTTGCGCTTGGT 734
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1157 ATTCTCAATCATCTTTACATGCAGAAGGGCAAAAGTGGTCCTTCTGTGGTTGCGCTTGGT 1216
Query 735 TCCACTCACCGCTTTCTAGCAAAGTACGTAACTGTGGTGCTCTACAAGTCCCTGCAGAGG 794
||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1217 TCCACTCACCGATTTCTAGCAAAGTATGTAACTGTGGTGCTCTACAAATCCCTGCAGAGG 1276
Query 795 TGAGTGAAGATGATGCCAATTCC 817
|||||||||||||||| ||||||
Sbjct 1277 TGAGTGAAGATGATGC-AATTCC 1298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39785444424
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5