BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946639
Length=501
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16295.1 | Symbols: SPH1 | S-protein homologue 1 | chr4:9215... 688 0.0
AT4G29035.1 | Symbols: | Plant self-incompatibility protein S1... 577 4e-164
> AT4G16295.1 | Symbols: SPH1 | S-protein homologue 1 | chr4:9215680-9216135
REVERSE LENGTH=456
Length=456
Score = 688 bits (372), Expect = 0.0
Identities = 430/458 (94%), Gaps = 4/458 (1%)
Strand=Plus/Plus
Query 25 ATGAATTGCATCAAACAATTTTTCTTGGCAATTTGCTTTTCTCTAGCCATAACATGTCAA 84
||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||
Sbjct 1 ATGAATTGCATCAAACAATTTCTCTTGGCAATTTGCTTTTCTCTGGCCCTAACATGTCAA 60
Query 85 GATCATGTCTTAGTCGGCGGCACCACCACGAGAGACATCATAGTCCCGAAGATTTCTGAG 144
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 GACCATGTCTTAGTCGGCGGCACCACCACGAGAGACATTATAGTCCCGAAGATTTCTGAG 120
Query 145 TGGCAAGTCACGGTTGTTAACGGTTTGACTACTGGTGAAACTCTTTTTATCCATTGTAAA 204
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 121 TGGCAAGTCACGGTTGTTAACGGTTTGACAACTGGTGAAACTCTTTTCATCCATTGTAAA 180
Query 205 TCTAAGGAAGATGATCTAGGTGAAATTAGTCTGAATTTTAGAGATAGATTTTCGTGGAAT 264
||||| |||||||||||||||||||||| |||||| |||||| |||||||||| |||||
Sbjct 181 TCTAAAGAAGATGATCTAGGTGAAATTAATCTGAAGTTTAGAAATAGATTTTCTTGGAAC 240
Query 265 TTCGGAGAAAATATGCTTCACTCAACTTTGTTTTGGTGCTATATGAGCAAAGATGATGGT 324
||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||
Sbjct 241 TTCGGAGAAAATATGCTTCACTCAACTTTTTTTTGGTGCTATATGAACAAAGATAATGGT 300
Query 325 TATATGAATGTAAAGGTATTTTGGGATGATGTTATTCT-GTTCCATAGATGCGGTTGGAA 383
||||||||||||| || ||||||||||||||||| || |||||||||||||||||||||
Sbjct 301 CATATGAATGTAAACGTGTTTTGGGATGATGTTAT-CTTGTTCCATAGATGCGGTTGGAA 359
Query 384 GAATTGCATTTGGACCGCAAAATCTGATGGCCTTTATCTTTGGAATTTAGCGAACGGTGA 443
||||||||||||||| |||||| |||||||||||||||||||||||| ||||| ||||||
Sbjct 360 GAATTGCATTTGGACTGCAAAAACTGATGGCCTTTATCTTTGGAATTCAGCGAGCGGTGA 419
Query 444 AGATGTATTGTCG-GAAAAATGGGAAGTTGGATGGTGA 480
|||||||||||| ||||| ||||||||||||||||||
Sbjct 420 AGATGTATTGTCAAGAAAA-TGGGAAGTTGGATGGTGA 456
> AT4G29035.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr4:14310315-14310770 FORWARD LENGTH=456
Length=456
Score = 577 bits (312), Expect = 4e-164
Identities = 414/462 (90%), Gaps = 12/462 (3%)
Strand=Plus/Plus
Query 25 ATGAATTGCATCAAACAATTTTTCTTGGCAATTTGCTTTTCTCTAGCCATAACATGTCAA 84
||||||| ||||||||||||| |||||||||||||||||| ||||| | |||||||||||
Sbjct 1 ATGAATTACATCAAACAATTTATCTTGGCAATTTGCTTTTATCTAGTCTTAACATGTCAA 60
Query 85 GATCATGTCTTAGTCGGCGGCACCACCACGAGAGACATCATAGTCCCGAAGATTTCTGAG 144
|||||||| |||| | ||| ||||||||||||||||||| |||||||||||||||| |||
Sbjct 61 GATCATGTTTTAGCCCGCGACACCACCACGAGAGACATCGTAGTCCCGAAGATTTCCGAG 120
Query 145 TGGCAAGTCACGGTTGTTAACGGTTTGACTACTGGTGAAACTCTTTTTATCCATTGTAAA 204
|||||||| ||||||| |||||||||||| ||||||||||||||||| |||||||||||
Sbjct 121 TGGCAAGTTACGGTTGCTAACGGTTTGACCACTGGTGAAACTCTTTTCATCCATTGTAAG 180
Query 205 TCTAAGGAAGATGATCTAGGTGAAATTAGTCTGAA-TT-TTAGAGATAGATTTTCGTGGA 262
||||||||| | ||||||||||| |||| ||||| || || |||||||||||| ||||
Sbjct 181 TCTAAGGAAAACGATCTAGGTGATATTAACCTGAAGTTCTT--AGATAGATTTTCTTGGA 238
Query 263 ATTTCGGAGAAAATATGCTTCACTCAACTTTGTTTTGGTGCTATATGAGCAAAGATGATG 322
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 ATTTTGGAGAAAATATGCTTCACTCAACTTTGTTTTGGTGCTATATGAGCAAAGATGATG 298
Query 323 GTTATATGAATGTAAAGGTATTTTGGGATGATGTTATTCTGTTCCATAGATGCGGTTGGA 382
|| ||||||||||||| || |||||||||||||||||||| || |||||||| | |||||
Sbjct 299 GTCATATGAATGTAAAAGTGTTTTGGGATGATGTTATTCTATTTCATAGATGTGATTGGA 358
Query 383 AGAATTGCATTTGGACCGCAAA-ATCTGATGGCCTTTATCTTTGGAATT-TAGCGAA-CG 439
||||||| ||||||||||||| | ||||||||||||||||||||||| | || || ||
Sbjct 359 AGAATTGTGTTTGGACCGCAAAGAA-TGATGGCCTTTATCTTTGGAATTCT-GC-AATCG 415
Query 440 GTGAAGATGTATTGTCGGAAAAATGGGAAGT-TGGATGGTGA 480
||||||||||| ||||||| |||||| || | ||||||||||
Sbjct 416 GTGAAGATGTACTGTCGGAGAAATGGAAA-TCTGGATGGTGA 456
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23911453972
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5