BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946641
Length=1129
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16270.1 | Symbols: | Peroxidase superfamily protein | chr4... 1764 0.0
AT4G16267.1 | Symbols: | Encodes a Plant thionin family protei... 174 1e-42
> AT4G16270.1 | Symbols: | Peroxidase superfamily protein | chr4:9205016-9206552
FORWARD LENGTH=1180
Length=1180
Score = 1764 bits (955), Expect = 0.0
Identities = 1063/1116 (95%), Gaps = 4/1116 (0%)
Strand=Plus/Plus
Query 4 AGTACCAACTCCATTGAATGTTAAAACTCAGAAGAAAGTGGAGTGATCATATAACGACAA 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6 AGTACCAACTCCATTGAATGTTAAAACTCAGAAGAAAGTGGAGTGATCATATAACGACAA 65
Query 64 TGAAGAATCTCTTTAACTTGTTCCTTATGCTTTTCGCTGCAATGCCAATTCTCTCATTCT 123
||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||| |||
Sbjct 66 TGAAGAATCTCTTTAACTTGTTCCTTATGTTTTTCTTTGCAATGCCAATTCTTTCACTCT 125
Query 124 CCGACAATCCAACCAACTTCAGCGAGAGTTGCGAAGACGGGAGTGGAGAAACCGGTTCAA 183
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 CCGAGAATCCAACCAATTTCAGCGAGAGTTGCGAAGACGGGAGTGGAGAAACCGGTTCAA 185
Query 184 GTTTTGGTATAGGGTTCGGTTTGGTTCTTGATTTCGGTTTGTACCGGAATAGCTGTCCGG 243
| ||||| |||||||||| ||||||||||||||| ||||| |||||||||||||| || |
Sbjct 186 GCTTTGGCATAGGGTTCGATTTGGTTCTTGATTTTGGTTTATACCGGAATAGCTGCCCCG 245
Query 244 AAGCAGAGTCCATAGTCTACTCGTGGGTCGAAACCACGGTGTTACAGGATCCAAGAATGG 303
|||||||||| || |||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 246 AAGCAGAGTCTATCGTCTACTCGTGGGTGGAAACCACGGTGTTAGAGGATCCAAGAATGG 305
Query 304 CTGCTTCTCTTCTCCGTCTTCATTTCCACGACTGTTTTGTCAATGGATGTGATGCTTCGG 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 CTGCTTCTCTTCTCCGTCTTCATTTCCACGACTGTTTTGTCAATGGATGTGATGCTTCGG 365
Query 364 TGTTGTTGGACGACACGGAAGGACTGGTTGGTGAAAAAACTGCGCCTCCTAATCTAAATT 423
||||||| || ||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 366 TGTTGTTAGATGACACAGAAGGACTGGTTGGTGAAAAAACGGCGCCTCCTAATCTAAATT 425
Query 424 CTCTCCGAGGGTTCGAAGTAATAGATTCGATAAAGTCTGATCTTGAATCTGTATGTCCAG 483
|||| |||||||||||||| || |||||||||||||||||| ||||||||||||||||||
Sbjct 426 CTCTACGAGGGTTCGAAGTGATTGATTCGATAAAGTCTGATATTGAATCTGTATGTCCAG 485
Query 484 AAACCGTCTCATGCGCAGACATTCTTGCCATGGCCGCTAGAGATTCAGTCGTTGTGTCGG 543
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 486 AGACCGTCTCATGCGCAGACATTCTTGCCATGGCTGCTAGAGATTCAGTCGTTGTGTCGG 545
Query 544 GTGGACCAAGCTGGGAGGTGGAAGTAGGAAGAAAAGACAGTAGAACAGCGAGCAAACAGG 603
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 546 GTGGACCAAGGTGGGAGGTGGAAGTAGGAAGAAAAGACAGTAGAACAGCAAGCAAACAGG 605
Query 604 CAGCAACAAATGGCTTACCCTCACCAAACTCAACCGTACCAACTCTCATATCTACCTTCC 663
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||
Sbjct 606 CAGCAACAAATGGCTTACCCTCACCAAACTCAACCGTATCAACTCTCATCTCTACTTTCC 665
Query 664 AAAATCTTGGCCTTTCACAAACCGACATGGTCGCTCTTTCCGGTGGACATACATTGGGAA 723
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 AGAATCTTGGCCTTTCACAAACCGACATGGTCGCTCTTTCCGGTGGACATACATTGGGAA 725
Query 724 AGGCAAGGTGCAGTTCGTTTACAGCTCGGTTGCAGCCACTGCAAACTGGACAACCGGCTA 783
||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 726 AGGCACGGTGCACTTCGTTTACAGCTCGGTTGCAGCCACTGCAAACTGGACAACCAGCTA 785
Query 784 ACCATGGAGACAACCTTGAGTTCCTCGAGTCACTACAACAGTTGTGCTCGACCGT-GGGC 842
|||| ||||||||||||||||||||||||||||| |||||||| |||||||| || ||||
Sbjct 786 ACCACGGAGACAACCTTGAGTTCCTCGAGTCACTGCAACAGTTATGCTCGACTGTTGGGC 845
Query 843 CCTACTGTCGGTATCACTCAGCTTGACTTGGTGACCCCATCAACATTTGACAACCAGTAC 902
|| | ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 846 CC-AGTGTAGGTATCACTCAGCTTGACTTGGTGACTCCATCAACATTTGACAACCAGTAC 904
Query 903 TATGTAAACCTCCTCTCAGGTGAGGGATTGCTTCCATCAGACCAAGCTTTAGCGGTTCAA 962
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 905 TATGTAAACCTCCTCTCGGGTGAGGGATTGCTTCCATCAGACCAGGCTTTAGCGGTTCAA 964
Query 963 GACCCAGGGACAAGGGCGATTGTTGAGACCTACGCAGCAGATCAGTCGGTTTTCTTTGAG 1022
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 965 GACCCAGGGACAAGGGCGATTGTTGAGACCTACGCAACAGATCAGTCGGTTTTCTTTGAG 1024
Query 1023 GATTTTAAGAACGCTATGGTTAAAATGGGAGGGATTACC-GGTGGTAGTAATAGCGAGAT 1081
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1025 GATTTTAAGAACGCTATGGTTAAAATGGGAGGGAT-ACCCGGTGGTAGTAATAGCGAGAT 1083
Query 1082 TAGGAGGAACTGTAGAATGATTAACTAAAAATAAAA 1117
||||| ||| ||||||||||||||||||||||||||
Sbjct 1084 TAGGAAGAATTGTAGAATGATTAACTAAAAATAAAA 1119
> AT4G16267.1 | Symbols: | Encodes a Plant thionin family protein
[pseudogene] | chr4:9204839-9205948 REVERSE LENGTH=270
Length=270
Score = 174 bits (94), Expect = 1e-42
Identities = 100/103 (97%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 550 CAAGCTGGGAGGTGGAAGTAGGAAGAAAAGACAGTAGAACAGCGAGCAAACAGGCAGCAA 609
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 103 CAAGGTGGGAGGTGGAAGTAGGAAGAAAAGACAGTAGAACAGCAAGCAAACAGGCAGCAA 44
Query 610 CAAATGGCTTACCCTCACCAAACTCAACCGTACCAACTCTCAT 652
|||||||||||||||||||||||||||||||| ||||||||||
Sbjct 43 CAAATGGCTTACCCTCACCAAACTCAACCGTATCAACTCTCAT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55371201135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5