BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946644

Length=403
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G79245.1 | Symbols:  | pseudogene of unknown protein | chr1:...  63.9    1e-09


> AT1G79245.1 | Symbols:  | pseudogene of unknown protein | chr1:29804735-29809514 
REVERSE LENGTH=4780
Length=4780

 Score = 63.9 bits (34),  Expect = 1e-09
 Identities = 36/37 (97%), Gaps = 0/37 (0%)
 Strand=Plus/Plus

Query  286   ATTTTGTGAGAGGCCAACCTGAGCTTTTGGAGAAGAT  322
             |||||||||||||||||||||||||||||| ||||||
Sbjct  4528  ATTTTGTGAGAGGCCAACCTGAGCTTTTGGTGAAGAT  4564



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19051476871


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5