BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946645
Length=958
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17000.1 | Symbols: UBC32 | ubiquitin-conjugating enzyme 32 ... 647 0.0
> AT3G17000.1 | Symbols: UBC32 | ubiquitin-conjugating enzyme 32
| chr3:5797179-5799683 FORWARD LENGTH=1263
Length=1263
Score = 647 bits (350), Expect = 0.0
Identities = 532/617 (86%), Gaps = 24/617 (4%)
Strand=Plus/Plus
Query 21 ATGGCGGATGAGAGATTTAA-CAGGAAGAACCCGGCGGTGAAGAGAATTTTGCAGGAGGT 79
|||||||||||||| | ||| | ||||||| |||||||||||||| ||||||||||||||
Sbjct 118 ATGGCGGATGAGAGGTATAATC-GGAAGAATCCGGCGGTGAAGAGGATTTTGCAGGAGGT 176
Query 80 TAAGGAGATGCAAGCTAATCCTTGTGATGATTTCATGTCTCTTCCCCTCGAGGAGAATAT 139
||||||||||||||||||||| | ||||||||| ||||||||||| || |||||||||||
Sbjct 177 TAAGGAGATGCAAGCTAATCCGTCTGATGATTTTATGTCTCTTCCTCTTGAGGAGAATAT 236
Query 140 ATTTGAGTGGCAATTCGCGATCCGAGGTCC-GAGTGACACTGAATTTGAAGGTGGGATAT 198
||||||||||||||||| ||||||||||| | |||| |||||||| || || ||||| |
Sbjct 237 CTTTGAGTGGCAATTCGCCATCCGAGGTCCTG-GTGATACTGAATTCGAGGGCGGGATTT 295
Query 199 ATCATGGGAGGATTCAGTTGCCTGCTGACTATCCTTTCAAACCTCCTTCGTTCATGTTAT 258
|||||||||| |||||||||||||| || ||||| |||||||||||||| ||||||||||
Sbjct 296 ATCATGGGAGAATTCAGTTGCCTGCAGATTATCCATTCAAACCTCCTTCATTCATGTTAT 355
Query 259 TGACCCCTAGTGGTCGTTTTGAAACCAACACCAAGATTTGCTTGAGCATTTCTGATTACC 318
||||||||| || || |||||||| |||||||||||||||||||||||||| | ||||
Sbjct 356 TGACCCCTAACGGGCGCTTTGAAACTAACACCAAGATTTGCTTGAGCATTTCAAACTACC 415
Query 319 ATCCC-GAGCATTGGCAACCTTCATGGAGTGTTCGGACTGCTTTGGTGGCTCTCATTGC- 376
| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 A-CCCTGAGCATTGGCAACCTTCATGGAGTGTTCGGACTGCTTTGGTGGCTCTCATTGCA 474
Query 377 TTTCATGCCTTCAAACCCCAATGGAGCACTAGGCTCGGTAGATTACCCAAAGGAGGAGAG 436
||| ||||| ||| |||||||||||||| ||||| |||||||| |||||||| |||||
Sbjct 475 TTT-ATGCCCACAAGTCCCAATGGAGCACTGGGCTCAGTAGATTATCCAAAGGATGAGAG 533
Query 437 ACGTGCACTAGCCACTAAATCACGCCAGACACCACCCAAATATGGTTCTCCTGAGCGTCA 496
|||| ||||||||| ||||||||| |||||||||| || ||||| |||||||| || ||
Sbjct 534 ACGTACACTAGCCATTAAATCACGTGAGACACCACCTAAGTATGGCTCTCCTGAACGGCA 593
Query 497 AAAACTTATTGATGAGATTCATCAGTACATGCTCAGCAA-GACA-CCTTCTGCTCCCAAA 554
|||| ||||||||||||||||||||||||| || ||||| | || || | | ||| |||
Sbjct 594 AAAAATTATTGATGAGATTCATCAGTACATCCTTAGCAAAG-CAACCGTG-GTTCCAAAA 651
Query 555 CC-CAATCCTCAGGAATGTAACAAAACACCCTTGGC-T-G-ATTCAGACAG-TCAGTCCC 609
|| | ||||| |||||||| | || |||| || | | | || |||| || ||| ||||
Sbjct 652 CCTCT-TCCTCTGGAATGTAGCCAAGCACC-TTC-CATCGTAT-CAGA-AGCTCACTCCC 706
Query 610 AAGC-GAAGCCACAGGA 625
||| || |||||||||
Sbjct 707 AAGTTGA-GCCACAGGA 722
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46868459151
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5