BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946647
Length=1234
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16230.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 998 0.0
AT4G17890.1 | Symbols: AGD8 | ARF-GAP domain 8 | chr4:9937022-9... 102 7e-21
> AT4G16230.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr4:9185298-9186779 FORWARD LENGTH=999
Length=999
Score = 998 bits (540), Expect = 0.0
Identities = 679/744 (91%), Gaps = 17/744 (2%)
Strand=Plus/Plus
Query 484 ATCAAGCATTAGGTTCCGACGAATTAACTCCACCGTACTTAGCACCAACAACAAGCGGAT 543
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 239 ATCAAGCATTAGGTTCCGACGAGTTAACTCCACCATACTTAGCACCAACAACAAGCGGAT 298
Query 544 CTCTCATTCTCGACGGCGTTAATTATGCTTCCGGCGGAAGTGGAATCCTCAATTCCACCG 603
||||||||||| | ||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 299 CTCTCATTCTCAATGGCGTTAATTATGCTTCGGGCGGAAGTGGAATTCTCAATTCCACCG 358
Query 604 GCAAATTATTTGGCGAACGTATAAATGTGGATGCACAACTAGACAACTTTGCAACGACAA 663
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GAAAATTATTTGGCGAACGTATAAATGTGGATGCACAACTAGACAACTTTGCAACGACAA 418
Query 664 GACAAGACATCATTTCTTGGATTGGTGATTCCCAAGCGGCTAAATTATTCCGGTCGGCAA 723
|||||||||||||||||||||| ||||| ||| |||| ||||||||||||||||| ||||
Sbjct 419 GACAAGACATCATTTCTTGGATCGGTGAATCCGAAGCCGCTAAATTATTCCGGTCAGCAA 478
Query 724 TTTTCTCGGTTACAACCGGTTCTAATGATTTAATCAACAATTATTTCACTCCGGTCGTAT 783
||||||||||||| || |||||||||||| |||||||||||||||||||||||||| |||
Sbjct 479 TTTTCTCGGTTACGACAGGTTCTAATGATCTAATCAACAATTATTTCACTCCGGTCATAT 538
Query 784 CAACCCTTGAACGGAAAGTA-T--CTCCAGAAGTCTTTGTAGATACAATGATCTCAAAAT 840
|||||||| ||||||||||| | |||||||||||||||| |||||||||||||||||||
Sbjct 539 CAACCCTTCAACGGAAAGTAGTAGCTCCAGAAGTCTTTGTTGATACAATGATCTCAAAAT 598
Query 841 TCCGATTACAACTCACCAGATTGTACCAATTGGGTGCGAGGAAAATCGTGGTGATTAATA 900
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TTCGATTACAACTCACCAGATTGTACCAATTGGGTGCGAGGAAAATCGTGGTGATTAATA 658
Query 901 TTGGGCCCATTGGTTGTATACCATTCGAGAGAGAGTCTGATCCAACGGCTGGAGATGAA- 959
|||| ||||| ||||||||||||||||||||||||||||||||| | |||||| || ||
Sbjct 659 TTGGTCCCATCGGTTGTATACCATTCGAGAGAGAGTCTGATCCAGCCGCTGGAAAT-AAC 717
Query 960 TGTTCGGTTGAACCAAATGAAGT-GGCACAAATGTATAATATCAAGCTTAAAACCCTATT 1018
|||| || ||||| ||||| || |||||||||||||||| | ||||| ||||| || |
Sbjct 718 TGTTTGGCCGAACCTAATGAGGTTGGCACAAATGTATAATCTGAAGCTGAAAACACTCGT 777
Query 1019 AGAGGATTTAAACAAGAATCTACAAGGTTCAAGATTCGTCTACGCTGATGTTTTTCGCAT 1078
||| || ||||||||||||||||||||||||||||||||||| | ||| |||||||||||
Sbjct 778 AGAAGAGTTAAACAAGAATCTACAAGGTTCAAGATTCGTCTATGGTGACGTTTTTCGCAT 837
Query 1079 TGTTTATGATATTCTACAAAATTATTCAATCTTACG-T---GAGA---AGA---TTCCGT 1128
|||| |||||||| |||||||||||||| ||||||| | |||| ||| |||| |
Sbjct 838 TGTTGATGATATTATACAAAATTATTCA-TCTTACGGTTTTGAGAGTGAGAAGATTCCTT 896
Query 1129 GTTGTTCGTTAGTAGGAAAAGTAGGTGGGCTGATTCCATGTGGCCCATCTTCTAAAGTAT 1188
||||||||||||| || |||||||||||||||||||||||||| ||| |||| |||||||
Sbjct 897 GTTGTTCGTTAGTTGGGAAAGTAGGTGGGCTGATTCCATGTGGTCCACCTTCAAAAGTAT 956
Query 1189 GTATGGACCGTTCCAAATATGTAT 1212
||||||||||||||||||||||||
Sbjct 957 GTATGGACCGTTCCAAATATGTAT 980
> AT4G17890.1 | Symbols: AGD8 | ARF-GAP domain 8 | chr4:9937022-9939493
FORWARD LENGTH=1688
Length=1688
Score = 102 bits (55), Expect = 7e-21
Identities = 99/119 (83%), Gaps = 7/119 (6%)
Strand=Plus/Plus
Query 117 GTTGAAGAATCAGATGAAGCAAGAAAGAGGTTCTCAAACGCAAAGTCCATTTCTTCTGCT 176
|||||||||||||||||||||||||||| |||| |||||||||||||||| ||||| |||
Sbjct 1006 GTTGAAGAATCAGATGAAGCAAGAAAGAAGTTCACAAACGCAAAGTCCATATCTTCAGCT 1065
Query 177 CAGTTTTTTGGAGATGAGATGAAAT-CTGCTGGTCGTGATGAATCAGAAA-CTACCCTT 233
|||| ||||| ||| ||| ||| | |||| || || |||||| ||| |||| |||
Sbjct 1066 CAGTACTTTGGGGATCAGAACAAAAAC-GCTGATC-TG--GAATCA-AAAGCTACTCTT 1119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60642258360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5