BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946654
Length=520
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16195.1 | Symbols: | Plant self-incompatibility protein S1... 616 9e-176
> AT4G16195.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr4:9173165-9173650 REVERSE LENGTH=486
Length=486
Score = 616 bits (333), Expect = 9e-176
Identities = 440/490 (90%), Gaps = 14/490 (3%)
Strand=Plus/Plus
Query 21 ATGAATATTCCAAAACAATATCTACCAATATTCATACTGCTTATCTTCATAACCACAAAA 80
||| |||||||||| ||||||||| || |||||||| || ||||||||||||| ||||||
Sbjct 1 ATGGATATTCCAAAGCAATATCTATCACTATTCATATTGATTATCTTCATAACTACAAAA 60
Query 81 CTATCACAAGCCGACCA-AAATAACAACAGTCCGGTTCCCAACGATCCATCATCAACCAA 139
|||||||||||||||| ||| ||| ||| ||| ||||||||||||||||||||||| ||
Sbjct 61 TTATCACAAGCCGACCATAAA-AACGACATTCCAGTTCCCAACGATCCATCATCAACAAA 119
Query 140 TTCTCTGTTTCCTGGCGGGAAAATAACCGTAGAAATCATTAACGATCTCGGTAATCAGCT 199
|||| |||||||| | ||||| |||||| ||||||| ||| |||||||||||||||||
Sbjct 120 TTCTGTGTTTCCTACCTCGAAAAGAACCGTGGAAATCAATAATGATCTCGGTAATCAGCT 179
Query 200 AACGTTACTCTATCATTGTAAATCAAAAGACGATGATCTT-GGTAACCGGACTTTGCAAT 258
||||||||| ||||||||||||||||||||||||||| || |||||||||||| |||||
Sbjct 180 AACGTTACTGTATCATTGTAAATCAAAAGACGATGAT-TTAGGTAACCGGACTCTGCAAC 238
Query 259 CAGGTGAGTCGTGGTCTTTTAGATTCGGGCGTCAATTCTTTGGAAGGACGTTGTATTTTT 318
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 239 CAGGTGAGTCGTGGTCTTTTAGTTTCGGGCGTCAATTCTTTGGAAGGACGTTGTATTTTT 298
Query 319 GTAATTTTGA-TTGGCCAAATGAATCGCATTCGTTCGATATATATAAAGACCATCGAGAT 377
||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GTAGTTTT-AGTTGGCCAAATGAATCGCATTCGTTCGATATATATAAAGACCATCGAGAT 357
Query 378 AGCTCCGGTGATAACTGGTGCGAGA---A--G-TGTGTGTGGAAGATAAGGA-AAACCGG 430
||| |||||||||| |||||||| | | ||||||||||||||||| | |||| ||
Sbjct 358 AGCGGCGGTGATAACAAGTGCGAGAGCGACAGGTGTGTGTGGAAGATAAGAAGAAAC-GG 416
Query 431 ACCTTGTCGGTTTAACGATGGAACTAAGCAGTTTGATATTTGTTATCCTTGGAATAAGTC 490
||||||| |||||||||||| ||| |||||||||||| ||||||||||||||||||| ||
Sbjct 417 ACCTTGTAGGTTTAACGATGAAACGAAGCAGTTTGATCTTTGTTATCCTTGGAATAAATC 476
Query 491 TTTGTATTGA 500
||||||||||
Sbjct 477 TTTGTATTGA 486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24865902765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5