BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946663
Length=1752
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16155.1 | Symbols: | dihydrolipoyl dehydrogenases | chr4:9... 2817 0.0
AT3G16950.2 | Symbols: LPD1, ptlpd1 | lipoamide dehydrogenase 1... 1862 0.0
> AT4G16155.1 | Symbols: | dihydrolipoyl dehydrogenases | chr4:9153363-9157322
REVERSE LENGTH=2100
Length=2100
Score = 2817 bits (1525), Expect = 0.0
Identities = 1680/1755 (96%), Gaps = 10/1755 (1%)
Strand=Plus/Plus
Query 1 tctctcactctctctctc-taacacaatgcaatcagctctctctctttccttctcACCAA 59
||||||| || ||||||| | ||||||||||||| | ||| ||||||||||||||| |||
Sbjct 165 TCTCTCATTCACTCTCTCGT-ACACAATGCAATCGGTTCTTTCTCTTTCCTTCTCA-CAA 222
Query 60 -CATCGCTTCCTTTAGCGAATCGTCCGCTTTGTTCATCCAACGCAGCTCCTTCTACTACG 118
||||||||||||||||||||||| ||||||||||||||||||||||||| | | |||||
Sbjct 223 GCATCGCTTCCTTTAGCGAATCGTACGCTTTGTTCATCCAACGCAGCTCC-T-T-CTACG 279
Query 119 CCGAGAAATCTCCGGTTCTGTGGACTCCGGCGAGAAGCGTTTGGTTTCTCTCCGTCGAAG 178
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 280 CCGAGAAATCTCCGGTTCTGTGGACTCCGGCGAGAAGCGTTTTGCTTCTCTCCGTCGAAG 339
Query 179 CAGTTGACATCGCGCCGATTT-CAAATTCAGAGTAGGAGAATCGAAGTCTCCGCCGCTGC 237
|| ||||| ||| |||| ||| || |||||||||||||||||||||||||||||||||||
Sbjct 340 CAATTGACCTCGTGCCG-TTTCCATATTCAGAGTAGGAGAATCGAAGTCTCCGCCGCTGC 398
Query 238 TTCTTCTTCCGCTGGAAATGGAGCTCCATCGAAATCGTTCGATTATGATTTGATCATTAT 297
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 399 TTCTTCTTCCGCTGGAAATGGAGCTCCATCGAAATCATTCGATTATGATTTGATCATTAT 458
Query 298 CGGAGCTGGAGTTGGTGGCCATGGAGCTGCATTGCACGCCGTCGAGAAGGGACTCAAAAC 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 CGGAGCTGGAGTTGGTGGCCATGGAGCTGCATTGCACGCCGTCGAGAAGGGACTCAAAAC 518
Query 358 TGCCATCATTGAAGGAGATGTTGTTGGAGGGACTTGCGTTAATAGAGGCTGTGTGCCTTC 417
||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 519 TGCTATCATTGAAGGAGATGTTGTTGGAGGTACTTGCGTTAACAGAGGCTGTGTGCCTTC 578
Query 418 AAAAGCTCTCCTTGCTGTTAGTGGTAGAATGCGGGAACTTCAGAACGAACATCACATGAA 477
|||||||| ||||||||||||||||| ||| ||||||| ||||||||||||||||||||
Sbjct 579 CAAAGCTCTACTTGCTGTTAGTGGTAGGATGAGGGAACTCCAGAACGAACATCACATGAA 638
Query 478 GGCTTTTGGTTTGCAGATTTCAGCTGCCGGTTATGACCGTCAGGGTGTGGCTGACCATGC 537
|||||||||||||||| |||||||||| ||||||||||| || |||||||||||||| ||
Sbjct 639 GGCTTTTGGTTTGCAGGTTTCAGCTGCTGGTTATGACCGCCAAGGTGTGGCTGACCACGC 698
Query 538 GAGTAATCTGGCTACCAAAATTAGGAACAATCTCACCAATTCAATGAAGGCACTTGGTGT 597
||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 699 AAGTAACCTGGCTACCAAAATTAGGAATAATCTCACCAATTCTATGAAGGCACTTGGTGT 758
Query 598 TGACATATTGACAGGGTTTGGGGCTGTCCTGGGTCCACAAAAGGTTAAATATGGTGACAA 657
||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 759 TGACATATTGACAGGGTTTGGCGCTGTTCTGGGCCCACAAAAGGTTAAATATGGTGACAA 818
Query 658 TATTATCACTGGAAAAGATATAATCATCGCAACTGGATCTGTACCGTTTGTCCCAAAAGG 717
||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 819 TATTATCACCGGAAAAGATATAATCATCGCAACTGGATCTGTACCGTTCGTCCCGAAAGG 878
Query 718 AATTGAAGTTGATGGAAAGACTGTTATCACAAGTGATCATGCATTGAAATTGGAGTCCGT 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 AATTGAAGTTGATGGAAAGACTGTTATCACAAGTGATCATGCATTGAAATTGGAGTCCGT 938
Query 778 TCCTGACTGGATTGCGATAGTAGGAAGTGGTTATATCGGTCTTGAGTTCAGTGATGTTTA 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 939 TCCTGACTGGATTGCGATAGTAGGAAGTGGTTATATCGGTCTTGAGTTCAGTGATGTTTA 998
Query 838 CACGGCCCTTGGAAGTGAGGTAACTTTTATTGAGGCTCTGGATCAGCTAATGCCTGGGTT 897
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 999 CACGGCCCTTGGAAGTGAGGTAACTTTTATTGAGGCACTGGATCAACTAATGCCTGGATT 1058
Query 898 TGATCCTGAGATCAGTAAGCTGGCTCAAAGGGTTCTAATAAATCCAAGAAAAATTGACTA 957
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1059 TGATCCTGAGATCAGTAAGCTGGCTCAAAGGGTTCTAATAAATACAAGAAAAATTGACTA 1118
Query 958 TCATACTGGAGTGTTTGCAAGCAAAATCACTCCAGCAAAGGATGGGAAACCAGTGATGAT 1017
||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1119 CCATACTGGAGTATTTGCAAGCAAAATCACTCCAGCAAAGGATGGGAAACCAGTGCTGAT 1178
Query 1018 TGAGCTAATTGATGCCAAAACCAAGGAACCCAAGGATACTTTGGAGGTTGACGCTGCTTT 1077
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1179 TGAACTAATTGATGCCAAAACCAAGGAACCCAAGGATACTTTGGAGGTTGACGCTGCTCT 1238
Query 1078 AATTGCTACTGGAAGAGCGCCATTCACCAATGGTCTTGGACTGGAAAATATCAATGTTGT 1137
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1239 AATTGCTACTGGAAGAGCTCCATTCACCAATGGTCTTGGCCTGGAAAATATCAATGTTAC 1298
Query 1138 GACACAAAGAGGTTTTATACCAGTTGATGAGCGAATGCGTGTTATTGATGGAAATGGAAA 1197
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1299 CACACAAAGAGGTTTTATACCAGTTGATGAGCGAATGCGTGTTATTGATGGAAATGGAAA 1358
Query 1198 GCTGGTTCCCCACTTGTACTGCATCGGTGATGCCAACGGTAAAATGATGCTTGCTCATGC 1257
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 1359 GCTGGTTCCCCACTTGTACTGCATCGGTGATGCCAATGGTAAACTGATGCTTGCTCATGC 1418
Query 1258 AGCTAGTGCCCAAGGAATTTCTGTGGTGGAGCAAGTCACAGGTAGAGATCATGTGCTTAA 1317
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1419 AGCTAGTGCTCAAGGAATTTCTGTGGTGGAGCAAGTCACAGGTAGAGATCATGTGCTTAA 1478
Query 1318 TCATCATAGCATCCCAGCTGCTTGTTTTACTCATCCTGAAATCAGTATGGTGGGATTGAC 1377
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1479 TCATCTTAGCATCCCAGCTGCTTGTTTTACTCATCCTGAAATAAGTATGGTGGGATTGAC 1538
Query 1378 AGAGCCTCAAGCAAGAGAGAAAGCTGAGAAAGAGGGATTCAAAGTAAGTATCGCCAAGAC 1437
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1539 AGAGCCTCAAGCGAGAGAGAAAGCTGAGAAAGAGGGATTCAAAGTAAGTATCGCCAAGAC 1598
Query 1438 AAGTTTCAAGGCAAATACAAAGGCCCTAGCCGAAAATGAAGGAGAAGGACTCGCTAAGAT 1497
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1599 AAGTTTCAAGGCAAACACAAAGGCCCTAGCCGAAAATGAAGGAGAAGGACTCGCTAAGAT 1658
Query 1498 GATATACAGACCTGACAATGGTGAAATCCTTGGAGTTCATATCTTTGGGTTGCATGCTGC 1557
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1659 GATATACAGACCTGACAATGGTGAAATCCTTGGAGTTCATATATTTGGATTGCATGCTGC 1718
Query 1558 TGATCTTATCCACGAAGCATCCAACGCGATTGCTTTAGGAACACGCATTCAGGACATAAA 1617
|||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1719 TGATCTTATCCATGAAGCATCAAACGCGATTGCTTTAGGAACACGTATTCAGGACATAAA 1778
Query 1618 ACTTGCTGTTCATGCACATCCAACACTGTCTGAAGTTGTAGACGAACTGTTTAAAGCAGC 1677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1779 ACTTGCTGTTCATGCACATCCAACACTGTCTGAAGTTGTAGACGAACTGTTTAAAGCAGC 1838
Query 1678 CAAGGTCGATAGTCCAGCTTCAGTAACAGCACAAAGTGTAAAAGTTGCTGTGTAAAACAA 1737
||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||
Sbjct 1839 CAAGGTCGATAGTCCAGCTTCAGTAACAGCACAAAGTGTGAAAGTTACTGTGTAAA-CAT 1897
Query 1738 GAAGAATTTAAGAGC 1752
|||||||||||||||
Sbjct 1898 GAAGAATTTAAGAGC 1912
> AT3G16950.2 | Symbols: LPD1, ptlpd1 | lipoamide dehydrogenase
1 | chr3:5786385-5790525 REVERSE LENGTH=2137
Length=2137
Score = 1862 bits (1008), Expect = 0.0
Identities = 1411/1604 (88%), Gaps = 34/1604 (2%)
Strand=Plus/Plus
Query 109 TTCTACTACGCCGAGAAATCTCCGGTTCTGTGGACTCCGGCGAGAAGCGTTTGGTTTCTC 168
|||| ||||||| |||| |||||||||||| ||||||||||| |||||||||||||||||
Sbjct 224 TTCT-CTACGCCCAGAAGTCTCCGGTTCTGCGGACTCCGGCGGGAAGCGTTTGGTTTCTC 282
Query 169 TCCGTCGAAGCAGTTGAC-A-TCGC-G---CCGATTTCAAATTC-AGAGTAGG-AG--AA 218
||||||| |||||| | | |||| | |||| | ||| ||| | |||||| || |
Sbjct 283 AACGTCGAATCAGTTGGCTATTCGCAGTAACCGAATCCAATTTCTA-AGTAGGAAGTCAT 341
Query 219 TCGAAGTCTCCGCCGCTGCTTCTTCTTCCGCTGGAAATGGAGCTCCATCGAAATCGTTCG 278
|| |||||||||| ||||||| | ||| ||||| |||||| ||||||| ||||
Sbjct 342 TCCAAGTCTCCGCTTCTGCTTC-AAGT--AATGGTAATGGCGCTCCACCGAAATCTTTCG 398
Query 279 ATTATGATTTGATCATTATCGGAGCTGGAGTTGGTGGCCATGGAGCTGCATTGCACGCCG 338
|||| ||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 399 ATTACGATTTGATCATCATCGGAGCTGGAGTTGGTGGCCACGGAGCTGCTTTGCACGCCG 458
Query 339 TCGAGAAGGGACTCAAAACTGCCATCATTGAAGGAGATGTTGTTGGAGGGACTTGCGTTA 398
| || |||||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 459 TTGAAAAGGGACTTAAAACAGCCATTATTGAAGGAGATGTTGTTGGAGGGACTTGTGTTA 518
Query 399 ATAGAGGCTGTGTGCCTTCAAAAGCTCTCCTTGCTGTTAGTGGTAGAATGCGGGAACTTC 458
| ||||| ||||||||||| |||||||| ||||||||||||||| |||||||||||||||
Sbjct 519 ACAGAGGATGTGTGCCTTCTAAAGCTCTTCTTGCTGTTAGTGGTCGAATGCGGGAACTTC 578
Query 459 AGAACGAACATCACATGAAGGCTTTTGGTTTGCAGATTTCAGCTGCCGGTTATGACCGTC 518
|||||||||||||||||||| | |||||| | ||| |||||||||| || ||||| ||||
Sbjct 579 AGAACGAACATCACATGAAGTCCTTTGGTCTCCAGGTTTCAGCTGCTGGATATGATCGTC 638
Query 519 AGGGTGTGGCTGACCATGCGAGTAATCTGGCTACCAAAATTAGGAA-CAATCTCACCAAT 577
|||||||||| || ||||| | |||||||||||||||||| | ||| |||||| ||||||
Sbjct 639 AGGGTGTGGCAGATCATGCTAATAATCTGGCTACCAAAAT-ACGAAACAATCTGACCAAT 697
Query 578 TCAATGAAGGCACTTGGTGTTGACATATTGACAGGGTTTGGG-GCTGTCCTGGGTCCACA 636
|||||||||||| ||||||||||||||||||| || ||||| | ||| |||||||||||
Sbjct 698 TCAATGAAGGCAATTGGTGTTGACATATTGACTGGATTTGGCAG-TGTTCTGGGTCCACA 756
Query 637 AAAGGTTAAATATGGT--G-ACAATATTATCACTGGAAAAGATATAATCATCGCAACTGG 693
||||||||||||||| | |||||||||| |||| ||||||||||||||| || |||||
Sbjct 757 AAAGGTTAAATATGGGAAGGACAATATTATTACTGCAAAAGATATAATCATTGCCACTGG 816
Query 694 ATCTGTACCGTTTGTCCCAAAAGGAATTGAAGTTGATGGAAAGACTGTTATCACAAGTGA 753
|||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 817 ATCTGTGCCGTTTGTCCCTAAAGGAATTGAAGTTGATGGAAAGACTGTGATCACCAGTGA 876
Query 754 TCATGCATTGAAATTGGAGTCCGTTCCTGACTGGATTGCGATAGTAGGAAGTGGTTATAT 813
||||| |||||||| ||||| || ||||| |||||||| || |||||||||||||||||
Sbjct 877 CCATGCTTTGAAATTAGAGTCTGTCCCTGAGTGGATTGCAATTGTAGGAAGTGGTTATAT 936
Query 814 CGGTCTTGAGTTCAGTGATGTTTACACGGCCCTTGGAAGTGAGGTAACTTTTATTGAGGC 873
|||||||||||||||||||||||||| || ||||||||||||||||||||||| || ||
Sbjct 937 TGGTCTTGAGTTCAGTGATGTTTACACAGCTCTTGGAAGTGAGGTAACTTTTATAGAAGC 996
Query 874 TCTGGATCAGCTAATGCCTGGGTTTGATCCTGAGATCAGTAAGCTGGCTCAAAGGGTTCT 933
|||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||| |
Sbjct 997 ACTGGATCAGCTAATGCCTGGATTTGATCCTGAGATCAGTAAGCTAGCTCAGAGGGTTTT 1056
Query 934 AATAAATCCAAGAAAAATTGACTATCATACTGGAGTGTTTGCAAGCAAAATCACTCCAGC 993
|||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 1057 GATAAATCCAAGAAAGATTGACTATCATACTGGAGTCTTTGCAAGCAAAATTACTCCGGC 1116
Query 994 AAAGGATGGGAAACCAGTGATGATTGAGCTAATTGATGCCAAAACCAAGGAACCCAAGGA 1053
|| ||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||
Sbjct 1117 AAGGGATGGGAAACCAGTTCTGATTGAGCTTATTGATGCCAAAACCAAGGAACCTAAGGA 1176
Query 1054 TACTTTGGAGGTTGACGCTGCT-TTAATTGCTACTGGAAGAGCGCCATTCACCAATGGTC 1112
|||||||||||| || |||||| ||| |||||||||| ||||| |||||||||||||| |
Sbjct 1177 TACTTTGGAGGTAGATGCTGCTCTTA-TTGCTACTGGGAGAGCTCCATTCACCAATGGAC 1235
Query 1113 TTGGACT-GGAAAATATCAATGTTGTGACACAAAGAGGTTTTATACCAGTTGATGAGCGA 1171
|||| || ||||||| ||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 1236 TTGG-CTTGGAAAATGTCAATGTTGTGACGCAGAGAGGTTTCATACCAGTTGATGAGCGA 1294
Query 1172 ATGCGTGTTATTGATGGAAATGGAAAGCTGGTTCCCCACTTGTACTGCATCGGTGATGCC 1231
|||||||| || |||||||| || | |||||||| ||||||||||||| |||||||||
Sbjct 1295 ATGCGTGTGATCGATGGAAAGGGGACTCTGGTTCCGAACTTGTACTGCATTGGTGATGCC 1354
Query 1232 AACGGTAAAATGATGCTTGCTCATGCAGCTAGTGCCCAAGGAATTTCTGTGGTGGAGCAA 1291
|| |||||| |||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 1355 AATGGTAAATTGATGCTTGCACATGCAGCCAGTGCCCAAGGAATTTCTGTGGTCGAGCAA 1414
Query 1292 GTCA-CAGGTAGAGATCATGTGCTTAATCATCATAGCATCCCAGCTGCTTGTTTTACTCA 1350
|||| | || |||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1415 GTCAGC-GGCAGAGATCATGTGCTTAATCATCTTAGCATCCCAGCTGCTTGCTTTACTCA 1473
Query 1351 TCCTGAAATCAGTATGGTGGGATTGACAGAGCCTCAAGCAAGAGAGAAAG-CTGAGAAAG 1409
|||||||||||| ||||||||||| |||||||||||||||| ||| |||| | ||||| |
Sbjct 1474 TCCTGAAATCAGCATGGTGGGATTAACAGAGCCTCAAGCAAAAGAAAAAGGC-GAGAAGG 1532
Query 1410 AGGGATTCAAAGTAAGTATCGCCAAGACAAGTTTCAAGGCAAATACAAAGGCCCTAGCCG 1469
| ||||| ||||| ||| | | |||||||||||||||||| || |||||||||||||| |
Sbjct 1533 AAGGATTTAAAGTTAGTGTTGTCAAGACAAGTTTCAAGGCTAACACAAAGGCCCTAGCTG 1592
Query 1470 AAAATGAAGGAGAAGGACTCGCTAAGATGATATACAGACCTGACAATGGTGAAATCCTT- 1528
||||||||||||||||| | ||||||||||||||| |||||||||||||||||||| ||
Sbjct 1593 AAAATGAAGGAGAAGGAATAGCTAAGATGATATACCGACCTGACAATGGTGAAATC-TTA 1651
Query 1529 GGAGTTCATATCTTTGGGTTGCATGCTGCTGATCTTATCCACGAAGCATCCAACGCGATT 1588
||||||||||| ||||| ||||||| ||||| |||||||| ||||| || || ||||||
Sbjct 1652 GGAGTTCATATATTTGGACTGCATGCAGCTGACCTTATCCATGAAGCTTCTAATGCGATT 1711
Query 1589 GCTTTAGGAACACGCATTCAGGACATAAAACTTG-CTGTTCATGCACATCCAACACTGTC 1647
||| ||||||| || ||||||||||||||| ||| | |||||||||||||||||||| ||
Sbjct 1712 GCTCTAGGAACGCGTATTCAGGACATAAAA-TTGGCAGTTCATGCACATCCAACACTCTC 1770
Query 1648 TGAAGTTGTAGACGAACTGTTTAAAGCAGCCAAGGTCGATAGTC 1691
||| || | ||||||||||| |||||||||||||| || ||||
Sbjct 1771 TGAGGTCCTCGACGAACTGTTCAAAGCAGCCAAGGTTGAAAGTC 1814
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86646140670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5