BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg946673 Length=2073 Score E Sequences producing significant alignments: (Bits) Value AT4G16110.1 | Symbols: ARR2, RR2 | response regulator 2 | chr4:... 1766 0.0 AT3G16857.2 | Symbols: ARR1, RR1 | response regulator 1 | chr3:... 435 1e-120 > AT4G16110.1 | Symbols: ARR2, RR2 | response regulator 2 | chr4:9112686-9116164 FORWARD LENGTH=2666 Length=2666 Score = 1766 bits (956), Expect = 0.0 Identities = 1080/1139 (95%), Gaps = 11/1139 (1%) Strand=Plus/Plus Query 1 GTTCGTTTTCTGGACGAGAGAGATGATAAATCCGGGTCACGGAAGAGGACCCGATTCGGG 60 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 271 GTTCGTTTTCTGGACGAGAGAGATGGTAAATCCGGGTCACGGAAGAGGACCCGATTCGGG 330 Query 61 TACTGCTGGTGGTGGGTCGAACTCCGACCCGTTTCCGGCGAATCTTCGAGTTCTTGTCGT 120 |||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 331 TACTGCTGCTGGTGGGTCAAACTCCGACCCGTTTCCTGCGAATCTTCGAGTTCTTGTCGT 390 Query 121 TGATGATGATCCAACTTGTCTCATGATCTTAGAGAGGATGCTTATGACTTGTCTTTACAG 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 391 TGATGATGATCCAACTTGTCTCATGATCTTAGAGAGGATGCTTATGACTTGTCTCTACAG 450 Query 181 AGTAACTAAATGTAACAGAGCAGAGATCGCATTGTCTCTGCTTCGAAAGAACAAGAATGG 240 |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| Sbjct 451 AGTAACTAAATGTAACAGAGCAGAGAGCGCATTGTCTCTGCTTCGGAAGAACAAGAATGG 510 Query 241 TTTTGATATTGTCATCAGTGATGTTCATATGCCTGACATGGATGGCTTCAAGCTTCTCGA 300 ||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || || Sbjct 511 TTTTGATATTGTCATTAGTGATGTTCATATGCCTGACATGGATGGTTTCAAGCTCCTTGA 570 Query 301 ACACGTTGGTTTAGAGATGGATTTACCTGTTATCATGATGTCTGCGGATGATTCGAAGAG 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 571 ACACGTTGGTTTAGAGATGGATTTACCTGTTATCATGATGTCTGCGGATGATTCGAAGAG 630 Query 361 CGTTGTGTTGAAAGGAGTGACTCACGGTGCAGTTGATTACCTCATCAAACCGGTACGTAT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 631 CGTTGTGTTGAAAGGAGTGACTCACGGTGCAGTTGATTACCTCATCAAACCGGTACGTAT 690 Query 421 TGAGGCTTTGAAGAATATATGGCAACATGTGGTGCGGAAGAAGCGGAACGAGTGGAATGT 480 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 691 TGAGGCTTTGAAGAATATATGGCAACATGTGGTGCGGAAGAAGCGTAACGAGTGGAATGT 750 Query 481 TTCGGAACATTCTGGAGGAAGTATTGAAGATACTGGCGGCGATAGGGACAGGCAGCAGCA 540 ||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 751 TTCTGAACATTCTGGAGGAAGTATTGAAGATACTGGCGGTGACAGGGACAGGCAGCAGCA 810 Query 541 GCAGAGGGAGGATGCTGATAACAACTCGTCTTCGGTTAATGAAGGGAACTGGAGGAACTC 600 ||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||| Sbjct 811 GCATAGGGAGGATGCTGATAACAACTCGTCTTCAGTTAATGAAGGGAACGGGAGGAGCTC 870 Query 601 AAGGAAGCGGAAGGAAGAGGAAGTAGATGATCAAGGGGATGATAAGGAGGACACTTCGAG 660 ||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| Sbjct 871 GAGGAAGCGGAAGGAAGAGGAAGTAGATGATCAAGGGGATGATAAGGAAGACTCATCGAG 930 Query 661 TTTGAAGAAACCACGCGTGGTTTGGTCGGTTGAATTGCATCAGCAGTTTGTCGCTGCTGT 720 ||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 931 TTTAAAGAAACCACGCGTGGTTTGGTCTGTTGAATTGCATCAGCAGTTTGTTGCTGCTGT 990 Query 721 GAATCAGCTCGGCGTTGACAAAGCGGTCCCTAAGAAGATCTTAGAGATGATGAATGTACC 780 ||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 991 GAATCAGCTAGGCGTTGACAAAGCTGTTCCTAAGAAGATCTTAGAGATGATGAATGTACC 1050 Query 781 CGGGCTAACGCGAGAAAACGTAGCCAGTCACCTCCAGAAGTATCGGATATATCTAAGACG 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1051 CGGGCTAACGCGAGAAAACGTAGCCAGTCACCTCCAGAAGTATCGGATATATCTGAGACG 1110 Query 841 GCTTGGAGGAGTATCGCAGCACCAGGGAAATATGAACCATTCGTTTATGACTGGTCAAGA 900 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 1111 GCTTGGAGGAGTATCGCAACACCAAGGAAATATGAACCATTCGTTTATGACTGGTCAAGA 1170 Query 901 TCAGAGTTTTGGTCCTCTTTCTTCGTTGAATGGATTTGATCT--AG-CTTTTGC-G---- 952 |||||||||||| ||||||||||||||||||||||||||||| | |||| || | Sbjct 1171 TCAGAGTTTTGGACCTCTTTCTTCGTTGAATGGATTTGATCTTCAATCTTTAGCTGTTAC 1230 Query 953 -GGTCAGCTTCCTGCTCAGAGCCTTGCACAGTTTCAAGCAGCTGGCCTTGGTCGGCCTAC 1011 |||||||| ||| ||||||||||||||||| ||||||||||||| ||||| |||||||| Sbjct 1231 TGGTCAGCTCCCTCCTCAGAGCCTTGCACAGCTTCAAGCAGCTGGTCTTGGCCGGCCTAC 1290 Query 1012 ACTCACTAAACCGGGGATGTCAGTTTCTCCCCTTGTAGATCAGAGAACCATCTTCAACTT 1071 |||| ||||||| |||||||| ||||||||||||||||||||||||| |||||||||||| Sbjct 1291 ACTCGCTAAACCAGGGATGTCGGTTTCTCCCCTTGTAGATCAGAGAAGCATCTTCAACTT 1350 Query 1072 TGAAAACCCGAAAATAAGATTCGGAGACGGACATGGACCA-ACGATGAACAATGGTAAT 1129 ||||||||| ||||||||||| |||||||||||||| | | |||||||||||||| ||| Sbjct 1351 TGAAAACCCAAAAATAAGATTTGGAGACGGACATGGTC-AGACGATGAACAATGGAAAT 1408 Score = 1086 bits (588), Expect = 0.0 Identities = 789/881 (90%), Gaps = 34/881 (4%) Strand=Plus/Plus Query 1215 TCAC-TG-GTGTGCGTCCTGGACAGAATGTTCAGAGCAGCGGAATGATGTTGCCTGTAGC 1272 |||| || || ||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1435 TCACATGCGTCTGCGTCCTGGACAGAATGTTCAGAGCAGCGGAATGATGTTGCCAGTAGC 1494 Query 1273 AGACCAGCTACCCCGAGGAGGGCCATCAATGCTACCATCCCTTGGGCAACAGCCGATATT 1332 |||||||||||| |||||||| ||||| |||||||||||||| ||||||||||||||||| Sbjct 1495 AGACCAGCTACCTCGAGGAGGACCATCGATGCTACCATCCCTCGGGCAACAGCCGATATT 1554 Query 1333 ATCAAGCAGCGTTTCAAGGAGAAGCGATCTCACTGGTGCGGTGGCGGTTAGAAACAGTAT 1392 ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 1555 GTCAAGCAGCGTTTCAAGAAGAAGCGATCTCACTGGTGCGCTGGCGGTTAGAAACAGTAT 1614 Query 1393 CCCCGAGACCAACAACAGAGTGTTACCAACTACCCACTCGGTCTTCAATAACTTCCCCTC 1452 |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| | Sbjct 1615 CCCCGAGACCAACAGCAGAGTGTTACCAACTACTCACTCGGTCTTCAATAACTTCCCCGC 1674 Query 1453 GAATCTACCTCGCAACAGCTTCCCATTGAAAAGTGCCCCAGGGATTTCAGTTCCAGTGTC 1512 | |||||||||||| ||||||||| ||| ||||||||||||||||||||||||||| || Sbjct 1675 GGATCTACCTCGCAGCAGCTTCCCGTTGGCAAGTGCCCCAGGGATTTCAGTTCCAGTATC 1734 Query 1513 GGCTTCTTATCAAGAAGAGGTCAACAGCTCGGACGCCAGAGGTGGTTCATCAGCTGCTAC 1572 | |||||| ||||||||||||||||||||||| || | ||| ||||||||||||||||| Sbjct 1735 AGTTTCTTACCAAGAAGAGGTCAACAGCTCGGATGCAAAAGGAGGTTCATCAGCTGCTAC 1794 Query 1573 CGCGGCAACTGCAGGGTTTGGTAACCCAAGCTACGACATATTTAACGATTTTCCGCATCA 1632 || | | | ||||||||||||||||||||||||||||||||||||||||| || Sbjct 1795 TGCTG-----G-A---TTTGGTAACCCAAGCTACGACATATTTAACGATTTTCCGCAGCA 1845 Query 1633 CCAACAGCACAACAACAACATCAGCAACAAACTGAACGATTGGGATCTGCGGAATATGGG 1692 ||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 1846 CCAACAGCACAACAAGAACATCAGCAATAAACTAAACGATTGGGATCTGCGGAATATGGG 1905 Query 1693 ATTGGTCTTCAGTTCCAATCAGGACGCAGCAGCTGCAACTGCA---GC-G--TTTTCCTC 1746 ||||||||||||||||||||||||||||||| ||||||| ||| || | |||||| | Sbjct 1906 ATTGGTCTTCAGTTCCAATCAGGACGCAGCAACTGCAACCGCAACCGCAGCATTTTCCAC 1965 Query 1747 TTCG------T-CT-T-C--CA-C-AC--AGAGAAAAAGGCGGGAAACAGACGCAACAGT 1791 |||| | || | | | | || |||||||||| |||||||| ||||||||||| Sbjct 1966 TTCGGAAGCATACTCTTCGTCTTCTACGCAGAGAAAAAGACGGGAAACGGACGCAACAGT 2025 Query 1792 GGTGGCTGAGCATGGACAGAACATTCAGCCACCAAGCCGGAATCTAAATCATCTTAACCA 1851 |||| ||||||||| |||||| | ||| |||| ||||||||||| ||||||| ||||| Sbjct 2026 TGTGGGTGAGCATGGGCAGAACCTGCAGTCACCGAGCCGGAATCTGTATCATCTGAACCA 2085 Query 1852 CGTTTATATGGATGGTGGTTCAGTCAGAGTGAAGTCAGAGAGAGTGGCGGATACCGTGAC 1911 ||||| |||||| |||||||||||||||||||||||||| ||||||||||| || ||||| Sbjct 2086 CGTTTTTATGGACGGTGGTTCAGTCAGAGTGAAGTCAGAAAGAGTGGCGGAGACAGTGAC 2145 Query 1912 TTGTCCTCCAGCAAATACATTGTTTCAAGAGCAGTATAATCAAGAAGACCTAATGAGCGC 1971 ||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||| Sbjct 2146 TTGTCCTCCAGCAAATACATTGTTTCACGAGCAGTATAATCAAGAAGATCTGATGAGCGC 2205 Query 1972 ATTTCTCAAACAGGAAGGCATTCCATCGGTAGATAACGAGTTCGATTTTGACGGATACTC 2031 ||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| Sbjct 2206 ATTTCTCAAACAGGAAGGCATCCCATCCGTAGATAACGAGTTCGAATTTGACGGATACTC 2265 Query 2032 CATCGATAATATTCC-GGTCTGACTACAGAAACTCAGACTA 2071 |||||||||||| || ||||||||||||||||||||||||| Sbjct 2266 CATCGATAATAT-CCAGGTCTGACTACAGAAACTCAGACTA 2305 > AT3G16857.2 | Symbols: ARR1, RR1 | response regulator 1 | chr3:5755821-5759443 FORWARD LENGTH=2669 Length=2669 Score = 435 bits (235), Expect = 1e-120 Identities = 386/456 (85%), Gaps = 22/456 (5%) Strand=Plus/Plus Query 103 TCTTCGAGTTCTTGTCGTTGATGATGATCCAACTTGTCTCATGATCTTAGAGAGGATGCT 162 ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 400 TCTTCGAGTTCTTGTCGTTGACGATGACCCAACTTGTCTCATGATCTTAGAGAGGATGCT 459 Query 163 TATGACTTGTCTTTACAGA-GTAACTAAATGTAACAGAGCAGAGATCGCATTGTCTCTGC 221 || ||||||||||||| || ||||| ||||| |||||||||||||| ||||||||||||| Sbjct 460 TAGGACTTGTCTTTAC-GAAGTAACGAAATGCAACAGAGCAGAGATGGCATTGTCTCTGC 518 Query 222 TTCGAAAGAACAAGA-ATGGTTTTGATATTGTCATCAGTGATGTTCATATGCCTGACATG 280 | || |||||||| | |||| || ||||| || ||||||||||||||||||||||||||| Sbjct 519 TCCGGAAGAACAA-ACATGGATTCGATATAGTAATCAGTGATGTTCATATGCCTGACATG 577 Query 281 GATGGCTTCAAGCTTCTCGAACACGTTGGTTTAGAGATGGATTTACCTGTTATCATGATG 340 || || ||||||||||| || || |||||| |||||||||| |||||||||||||||||| Sbjct 578 GACGGTTTCAAGCTTCTTGAGCATGTTGGTCTAGAGATGGACTTACCTGTTATCATGATG 637 Query 341 TCTGCGGATGATTCGAAGAGCGTTGTGT-TGAAAGG-AGTGACTCACGGTGCAGTTGATT 398 |||||||||||||| ||||| || || | | ||||| ||| || |||||||| ||||||| Sbjct 638 TCTGCGGATGATTCAAAGAGTGTGGT-TCT-AAAGGGAGTAACGCACGGTGCGGTTGATT 695 Query 399 ACCTCATCAAACCGGTACGTATTGAGGCT-TTGAAGAATATATGGCAACATGTGGTGCGG 457 |||| ||||| || |||||||| ||||| || ||||| |||||||| ||||| || || Sbjct 696 ACCTTATCAAGCCTGTACGTATGGAGGCACTT-AAGAACATATGGCAGCATGTAGTTAGG 754 Query 458 AAGAAGCGGAAC-GAGTGGAATGTTTCGGAACATTCTGGAGGAAGTATTGAAGATACTGG 516 |||| | | || || |||| ||| ||||||||||||| | | | ||||| || ||||| Sbjct 755 AAGAGGAG-AAGTGAATGGAGTGTACCGGAACATTCTGG-G-A-GCATTGAGGAGACTGG 810 Query 517 CGGCGATAGGGACAGGCAGCAGCAGCAGAG-GGAGG 551 || || | |||| |||||||| || || ||||| Sbjct 811 CGA-GA--G--ACAG-CAGCAGCAACATAGAGGAGG 840 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 102760515615 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5