BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946673
Length=2073
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16110.1 | Symbols: ARR2, RR2 | response regulator 2 | chr4:... 1766 0.0
AT3G16857.2 | Symbols: ARR1, RR1 | response regulator 1 | chr3:... 435 1e-120
> AT4G16110.1 | Symbols: ARR2, RR2 | response regulator 2 | chr4:9112686-9116164
FORWARD LENGTH=2666
Length=2666
Score = 1766 bits (956), Expect = 0.0
Identities = 1080/1139 (95%), Gaps = 11/1139 (1%)
Strand=Plus/Plus
Query 1 GTTCGTTTTCTGGACGAGAGAGATGATAAATCCGGGTCACGGAAGAGGACCCGATTCGGG 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 271 GTTCGTTTTCTGGACGAGAGAGATGGTAAATCCGGGTCACGGAAGAGGACCCGATTCGGG 330
Query 61 TACTGCTGGTGGTGGGTCGAACTCCGACCCGTTTCCGGCGAATCTTCGAGTTCTTGTCGT 120
|||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 331 TACTGCTGCTGGTGGGTCAAACTCCGACCCGTTTCCTGCGAATCTTCGAGTTCTTGTCGT 390
Query 121 TGATGATGATCCAACTTGTCTCATGATCTTAGAGAGGATGCTTATGACTTGTCTTTACAG 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 391 TGATGATGATCCAACTTGTCTCATGATCTTAGAGAGGATGCTTATGACTTGTCTCTACAG 450
Query 181 AGTAACTAAATGTAACAGAGCAGAGATCGCATTGTCTCTGCTTCGAAAGAACAAGAATGG 240
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 451 AGTAACTAAATGTAACAGAGCAGAGAGCGCATTGTCTCTGCTTCGGAAGAACAAGAATGG 510
Query 241 TTTTGATATTGTCATCAGTGATGTTCATATGCCTGACATGGATGGCTTCAAGCTTCTCGA 300
||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 511 TTTTGATATTGTCATTAGTGATGTTCATATGCCTGACATGGATGGTTTCAAGCTCCTTGA 570
Query 301 ACACGTTGGTTTAGAGATGGATTTACCTGTTATCATGATGTCTGCGGATGATTCGAAGAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 ACACGTTGGTTTAGAGATGGATTTACCTGTTATCATGATGTCTGCGGATGATTCGAAGAG 630
Query 361 CGTTGTGTTGAAAGGAGTGACTCACGGTGCAGTTGATTACCTCATCAAACCGGTACGTAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 CGTTGTGTTGAAAGGAGTGACTCACGGTGCAGTTGATTACCTCATCAAACCGGTACGTAT 690
Query 421 TGAGGCTTTGAAGAATATATGGCAACATGTGGTGCGGAAGAAGCGGAACGAGTGGAATGT 480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 691 TGAGGCTTTGAAGAATATATGGCAACATGTGGTGCGGAAGAAGCGTAACGAGTGGAATGT 750
Query 481 TTCGGAACATTCTGGAGGAAGTATTGAAGATACTGGCGGCGATAGGGACAGGCAGCAGCA 540
||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 751 TTCTGAACATTCTGGAGGAAGTATTGAAGATACTGGCGGTGACAGGGACAGGCAGCAGCA 810
Query 541 GCAGAGGGAGGATGCTGATAACAACTCGTCTTCGGTTAATGAAGGGAACTGGAGGAACTC 600
||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||
Sbjct 811 GCATAGGGAGGATGCTGATAACAACTCGTCTTCAGTTAATGAAGGGAACGGGAGGAGCTC 870
Query 601 AAGGAAGCGGAAGGAAGAGGAAGTAGATGATCAAGGGGATGATAAGGAGGACACTTCGAG 660
||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||
Sbjct 871 GAGGAAGCGGAAGGAAGAGGAAGTAGATGATCAAGGGGATGATAAGGAAGACTCATCGAG 930
Query 661 TTTGAAGAAACCACGCGTGGTTTGGTCGGTTGAATTGCATCAGCAGTTTGTCGCTGCTGT 720
||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 931 TTTAAAGAAACCACGCGTGGTTTGGTCTGTTGAATTGCATCAGCAGTTTGTTGCTGCTGT 990
Query 721 GAATCAGCTCGGCGTTGACAAAGCGGTCCCTAAGAAGATCTTAGAGATGATGAATGTACC 780
||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 991 GAATCAGCTAGGCGTTGACAAAGCTGTTCCTAAGAAGATCTTAGAGATGATGAATGTACC 1050
Query 781 CGGGCTAACGCGAGAAAACGTAGCCAGTCACCTCCAGAAGTATCGGATATATCTAAGACG 840
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1051 CGGGCTAACGCGAGAAAACGTAGCCAGTCACCTCCAGAAGTATCGGATATATCTGAGACG 1110
Query 841 GCTTGGAGGAGTATCGCAGCACCAGGGAAATATGAACCATTCGTTTATGACTGGTCAAGA 900
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1111 GCTTGGAGGAGTATCGCAACACCAAGGAAATATGAACCATTCGTTTATGACTGGTCAAGA 1170
Query 901 TCAGAGTTTTGGTCCTCTTTCTTCGTTGAATGGATTTGATCT--AG-CTTTTGC-G---- 952
|||||||||||| ||||||||||||||||||||||||||||| | |||| || |
Sbjct 1171 TCAGAGTTTTGGACCTCTTTCTTCGTTGAATGGATTTGATCTTCAATCTTTAGCTGTTAC 1230
Query 953 -GGTCAGCTTCCTGCTCAGAGCCTTGCACAGTTTCAAGCAGCTGGCCTTGGTCGGCCTAC 1011
|||||||| ||| ||||||||||||||||| ||||||||||||| ||||| ||||||||
Sbjct 1231 TGGTCAGCTCCCTCCTCAGAGCCTTGCACAGCTTCAAGCAGCTGGTCTTGGCCGGCCTAC 1290
Query 1012 ACTCACTAAACCGGGGATGTCAGTTTCTCCCCTTGTAGATCAGAGAACCATCTTCAACTT 1071
|||| ||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1291 ACTCGCTAAACCAGGGATGTCGGTTTCTCCCCTTGTAGATCAGAGAAGCATCTTCAACTT 1350
Query 1072 TGAAAACCCGAAAATAAGATTCGGAGACGGACATGGACCA-ACGATGAACAATGGTAAT 1129
||||||||| ||||||||||| |||||||||||||| | | |||||||||||||| |||
Sbjct 1351 TGAAAACCCAAAAATAAGATTTGGAGACGGACATGGTC-AGACGATGAACAATGGAAAT 1408
Score = 1086 bits (588), Expect = 0.0
Identities = 789/881 (90%), Gaps = 34/881 (4%)
Strand=Plus/Plus
Query 1215 TCAC-TG-GTGTGCGTCCTGGACAGAATGTTCAGAGCAGCGGAATGATGTTGCCTGTAGC 1272
|||| || || ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1435 TCACATGCGTCTGCGTCCTGGACAGAATGTTCAGAGCAGCGGAATGATGTTGCCAGTAGC 1494
Query 1273 AGACCAGCTACCCCGAGGAGGGCCATCAATGCTACCATCCCTTGGGCAACAGCCGATATT 1332
|||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||
Sbjct 1495 AGACCAGCTACCTCGAGGAGGACCATCGATGCTACCATCCCTCGGGCAACAGCCGATATT 1554
Query 1333 ATCAAGCAGCGTTTCAAGGAGAAGCGATCTCACTGGTGCGGTGGCGGTTAGAAACAGTAT 1392
||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1555 GTCAAGCAGCGTTTCAAGAAGAAGCGATCTCACTGGTGCGCTGGCGGTTAGAAACAGTAT 1614
Query 1393 CCCCGAGACCAACAACAGAGTGTTACCAACTACCCACTCGGTCTTCAATAACTTCCCCTC 1452
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1615 CCCCGAGACCAACAGCAGAGTGTTACCAACTACTCACTCGGTCTTCAATAACTTCCCCGC 1674
Query 1453 GAATCTACCTCGCAACAGCTTCCCATTGAAAAGTGCCCCAGGGATTTCAGTTCCAGTGTC 1512
| |||||||||||| ||||||||| ||| ||||||||||||||||||||||||||| ||
Sbjct 1675 GGATCTACCTCGCAGCAGCTTCCCGTTGGCAAGTGCCCCAGGGATTTCAGTTCCAGTATC 1734
Query 1513 GGCTTCTTATCAAGAAGAGGTCAACAGCTCGGACGCCAGAGGTGGTTCATCAGCTGCTAC 1572
| |||||| ||||||||||||||||||||||| || | ||| |||||||||||||||||
Sbjct 1735 AGTTTCTTACCAAGAAGAGGTCAACAGCTCGGATGCAAAAGGAGGTTCATCAGCTGCTAC 1794
Query 1573 CGCGGCAACTGCAGGGTTTGGTAACCCAAGCTACGACATATTTAACGATTTTCCGCATCA 1632
|| | | | ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1795 TGCTG-----G-A---TTTGGTAACCCAAGCTACGACATATTTAACGATTTTCCGCAGCA 1845
Query 1633 CCAACAGCACAACAACAACATCAGCAACAAACTGAACGATTGGGATCTGCGGAATATGGG 1692
||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1846 CCAACAGCACAACAAGAACATCAGCAATAAACTAAACGATTGGGATCTGCGGAATATGGG 1905
Query 1693 ATTGGTCTTCAGTTCCAATCAGGACGCAGCAGCTGCAACTGCA---GC-G--TTTTCCTC 1746
||||||||||||||||||||||||||||||| ||||||| ||| || | |||||| |
Sbjct 1906 ATTGGTCTTCAGTTCCAATCAGGACGCAGCAACTGCAACCGCAACCGCAGCATTTTCCAC 1965
Query 1747 TTCG------T-CT-T-C--CA-C-AC--AGAGAAAAAGGCGGGAAACAGACGCAACAGT 1791
|||| | || | | | | || |||||||||| |||||||| |||||||||||
Sbjct 1966 TTCGGAAGCATACTCTTCGTCTTCTACGCAGAGAAAAAGACGGGAAACGGACGCAACAGT 2025
Query 1792 GGTGGCTGAGCATGGACAGAACATTCAGCCACCAAGCCGGAATCTAAATCATCTTAACCA 1851
|||| ||||||||| |||||| | ||| |||| ||||||||||| ||||||| |||||
Sbjct 2026 TGTGGGTGAGCATGGGCAGAACCTGCAGTCACCGAGCCGGAATCTGTATCATCTGAACCA 2085
Query 1852 CGTTTATATGGATGGTGGTTCAGTCAGAGTGAAGTCAGAGAGAGTGGCGGATACCGTGAC 1911
||||| |||||| |||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 2086 CGTTTTTATGGACGGTGGTTCAGTCAGAGTGAAGTCAGAAAGAGTGGCGGAGACAGTGAC 2145
Query 1912 TTGTCCTCCAGCAAATACATTGTTTCAAGAGCAGTATAATCAAGAAGACCTAATGAGCGC 1971
||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 2146 TTGTCCTCCAGCAAATACATTGTTTCACGAGCAGTATAATCAAGAAGATCTGATGAGCGC 2205
Query 1972 ATTTCTCAAACAGGAAGGCATTCCATCGGTAGATAACGAGTTCGATTTTGACGGATACTC 2031
||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 2206 ATTTCTCAAACAGGAAGGCATCCCATCCGTAGATAACGAGTTCGAATTTGACGGATACTC 2265
Query 2032 CATCGATAATATTCC-GGTCTGACTACAGAAACTCAGACTA 2071
|||||||||||| || |||||||||||||||||||||||||
Sbjct 2266 CATCGATAATAT-CCAGGTCTGACTACAGAAACTCAGACTA 2305
> AT3G16857.2 | Symbols: ARR1, RR1 | response regulator 1 | chr3:5755821-5759443
FORWARD LENGTH=2669
Length=2669
Score = 435 bits (235), Expect = 1e-120
Identities = 386/456 (85%), Gaps = 22/456 (5%)
Strand=Plus/Plus
Query 103 TCTTCGAGTTCTTGTCGTTGATGATGATCCAACTTGTCTCATGATCTTAGAGAGGATGCT 162
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 400 TCTTCGAGTTCTTGTCGTTGACGATGACCCAACTTGTCTCATGATCTTAGAGAGGATGCT 459
Query 163 TATGACTTGTCTTTACAGA-GTAACTAAATGTAACAGAGCAGAGATCGCATTGTCTCTGC 221
|| ||||||||||||| || ||||| ||||| |||||||||||||| |||||||||||||
Sbjct 460 TAGGACTTGTCTTTAC-GAAGTAACGAAATGCAACAGAGCAGAGATGGCATTGTCTCTGC 518
Query 222 TTCGAAAGAACAAGA-ATGGTTTTGATATTGTCATCAGTGATGTTCATATGCCTGACATG 280
| || |||||||| | |||| || ||||| || |||||||||||||||||||||||||||
Sbjct 519 TCCGGAAGAACAA-ACATGGATTCGATATAGTAATCAGTGATGTTCATATGCCTGACATG 577
Query 281 GATGGCTTCAAGCTTCTCGAACACGTTGGTTTAGAGATGGATTTACCTGTTATCATGATG 340
|| || ||||||||||| || || |||||| |||||||||| ||||||||||||||||||
Sbjct 578 GACGGTTTCAAGCTTCTTGAGCATGTTGGTCTAGAGATGGACTTACCTGTTATCATGATG 637
Query 341 TCTGCGGATGATTCGAAGAGCGTTGTGT-TGAAAGG-AGTGACTCACGGTGCAGTTGATT 398
|||||||||||||| ||||| || || | | ||||| ||| || |||||||| |||||||
Sbjct 638 TCTGCGGATGATTCAAAGAGTGTGGT-TCT-AAAGGGAGTAACGCACGGTGCGGTTGATT 695
Query 399 ACCTCATCAAACCGGTACGTATTGAGGCT-TTGAAGAATATATGGCAACATGTGGTGCGG 457
|||| ||||| || |||||||| ||||| || ||||| |||||||| ||||| || ||
Sbjct 696 ACCTTATCAAGCCTGTACGTATGGAGGCACTT-AAGAACATATGGCAGCATGTAGTTAGG 754
Query 458 AAGAAGCGGAAC-GAGTGGAATGTTTCGGAACATTCTGGAGGAAGTATTGAAGATACTGG 516
|||| | | || || |||| ||| ||||||||||||| | | | ||||| || |||||
Sbjct 755 AAGAGGAG-AAGTGAATGGAGTGTACCGGAACATTCTGG-G-A-GCATTGAGGAGACTGG 810
Query 517 CGGCGATAGGGACAGGCAGCAGCAGCAGAG-GGAGG 551
|| || | |||| |||||||| || || |||||
Sbjct 811 CGA-GA--G--ACAG-CAGCAGCAACATAGAGGAGG 840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102760515615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5