BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946680
Length=624
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16045.1 | Symbols: | TRAF-like superfamily protein | chr4:... 697 0.0
> AT4G16045.1 | Symbols: | TRAF-like superfamily protein | chr4:9089906-9091860
FORWARD LENGTH=1149
Length=1149
Score = 697 bits (377), Expect = 0.0
Identities = 532/607 (88%), Gaps = 9/607 (1%)
Strand=Plus/Plus
Query 1 TGAAGTTACATCCACTATTGTGATGGATTTCTTGTTTTATGGGTTAAAGTCTCTTGAAGA 60
|||||| ||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 549 TGAAGTAACATCCACTCTTTTGATGGATTTCTTGTTTTATAGGTTAAAGTCTCTTGAAGA 608
Query 61 AAAATGGAGAAAATTAGAAAGACTTGCAAGCGTGGTTGCGAGAGAATTGATGATCAGTAA 120
|||| | |||| | |||| ||||| ||| ||||| || | |||| |||| | ||||||
Sbjct 609 AAAACGCAGAAGGCTCGAAACACTTGTAAGAGTGGTCGCAAAAGAAGTGATCAACAGTAA 668
Query 121 CCAAATTGAATCGGCTATGAAGACTCTTGAAGAGGAAACTAAGAAGGAGAGAACAAATGA 180
||||| |||||| |||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 669 CCAAAGTGAATCCGCTATGAAGAATCTTGAAGAGGAAACTAAGAAAGAGAGAACAAATGA 728
Query 181 TGACAAAGAATTCGCTTTAAAGATCAAAGAAGACGAAACTAAGAATGAAAGAACAATTGA 240
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 729 TGACAAAGAATTCGCTTTAAAGATTAATGAAGACGAAACTAAGAATGAAAGAACAATTGA 788
Query 241 TGCCAAAGAATTTCAAGCT-CTAATTGCT-AGTGTGACCAATGATATGTTTGTTCTTGTT 298
|||| |||||| ||||| | ||||||| | |||| ||| |||||| ||| | |||
Sbjct 789 CGCCATGGAATTTGAAGCTTC-AATTGCTTA-TGTGGTCAACGATATGCTTGGT---GTT 843
Query 299 AAAAATCCCATGTTACTTCTAGAGAGATTTGTTCTTGCGCCATTGCCTGAAATGGGTTCT 358
| | |||| |||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 844 ACAGATCCGTTGTTACGTCTAGAGAGATTTGTTCTTGCACCATTGCCTGAAATGGGTTCT 903
Query 359 CCAAAGCTTGTGCAGGTTGGCAATGTCCAAACACAGTATAATATGGAGCACGATGAGAAG 418
||||||||| |||||||| |||| ||| | |||| |||||||||| | ||||||||||
Sbjct 904 CCAAAGCTTCTGCAGGTTTCCAATCTCCGTATACAGCATAATATGGAACCCGATGAGAAG 963
Query 419 CAATTAGCTGATTATGGTAGATGGGCTTTGGAGGTATTTGTTTTTGACTATATCTTCTGC 478
|||||||||||||||||||||||||| ||||||||||||||| ||||| |||| ||||||
Sbjct 964 CAATTAGCTGATTATGGTAGATGGGCCTTGGAGGTATTTGTTCTTGACCATATATTCTGC 1023
Query 479 AACAAAATTGAATTTGCTTATGAAGAAACTATTGCATTAGAAA-GGCAAGAAGAGCTTAT 537
|||||||||||||| | |||||||||||||||||||| |||| |||||||||| |||||
Sbjct 1024 AACAAAATTGAATTCACATATGAAGAAACTATTGCATT-GAAAAGGCAAGAAGAACTTAT 1082
Query 538 TCAGGAAGAAGAAAAAGAGAAGAACACTAAACTCaaaaaaaaaCTTGTTGGaaaaaaaGT 597
||| ||||| ||| |||||||||||||||||||||||||| | ||||||| ||||||||
Sbjct 1083 TCATGAAGAGGAAGCAGAGAAGAACACTAAACTCAAAAAAACATTTGTTGGTAAAAAAGT 1142
Query 598 GAAGTAA 604
||| |||
Sbjct 1143 GAACTAA 1149
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30090254053
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5