BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg946680 Length=624 Score E Sequences producing significant alignments: (Bits) Value AT4G16045.1 | Symbols: | TRAF-like superfamily protein | chr4:... 697 0.0 > AT4G16045.1 | Symbols: | TRAF-like superfamily protein | chr4:9089906-9091860 FORWARD LENGTH=1149 Length=1149 Score = 697 bits (377), Expect = 0.0 Identities = 532/607 (88%), Gaps = 9/607 (1%) Strand=Plus/Plus Query 1 TGAAGTTACATCCACTATTGTGATGGATTTCTTGTTTTATGGGTTAAAGTCTCTTGAAGA 60 |||||| ||||||||| || |||||||||||||||||||| ||||||||||||||||||| Sbjct 549 TGAAGTAACATCCACTCTTTTGATGGATTTCTTGTTTTATAGGTTAAAGTCTCTTGAAGA 608 Query 61 AAAATGGAGAAAATTAGAAAGACTTGCAAGCGTGGTTGCGAGAGAATTGATGATCAGTAA 120 |||| | |||| | |||| ||||| ||| ||||| || | |||| |||| | |||||| Sbjct 609 AAAACGCAGAAGGCTCGAAACACTTGTAAGAGTGGTCGCAAAAGAAGTGATCAACAGTAA 668 Query 121 CCAAATTGAATCGGCTATGAAGACTCTTGAAGAGGAAACTAAGAAGGAGAGAACAAATGA 180 ||||| |||||| |||||||||| ||||||||||||||||||||| |||||||||||||| Sbjct 669 CCAAAGTGAATCCGCTATGAAGAATCTTGAAGAGGAAACTAAGAAAGAGAGAACAAATGA 728 Query 181 TGACAAAGAATTCGCTTTAAAGATCAAAGAAGACGAAACTAAGAATGAAAGAACAATTGA 240 |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 729 TGACAAAGAATTCGCTTTAAAGATTAATGAAGACGAAACTAAGAATGAAAGAACAATTGA 788 Query 241 TGCCAAAGAATTTCAAGCT-CTAATTGCT-AGTGTGACCAATGATATGTTTGTTCTTGTT 298 |||| |||||| ||||| | ||||||| | |||| ||| |||||| ||| | ||| Sbjct 789 CGCCATGGAATTTGAAGCTTC-AATTGCTTA-TGTGGTCAACGATATGCTTGGT---GTT 843 Query 299 AAAAATCCCATGTTACTTCTAGAGAGATTTGTTCTTGCGCCATTGCCTGAAATGGGTTCT 358 | | |||| |||||| ||||||||||||||||||||| ||||||||||||||||||||| Sbjct 844 ACAGATCCGTTGTTACGTCTAGAGAGATTTGTTCTTGCACCATTGCCTGAAATGGGTTCT 903 Query 359 CCAAAGCTTGTGCAGGTTGGCAATGTCCAAACACAGTATAATATGGAGCACGATGAGAAG 418 ||||||||| |||||||| |||| ||| | |||| |||||||||| | |||||||||| Sbjct 904 CCAAAGCTTCTGCAGGTTTCCAATCTCCGTATACAGCATAATATGGAACCCGATGAGAAG 963 Query 419 CAATTAGCTGATTATGGTAGATGGGCTTTGGAGGTATTTGTTTTTGACTATATCTTCTGC 478 |||||||||||||||||||||||||| ||||||||||||||| ||||| |||| |||||| Sbjct 964 CAATTAGCTGATTATGGTAGATGGGCCTTGGAGGTATTTGTTCTTGACCATATATTCTGC 1023 Query 479 AACAAAATTGAATTTGCTTATGAAGAAACTATTGCATTAGAAA-GGCAAGAAGAGCTTAT 537 |||||||||||||| | |||||||||||||||||||| |||| |||||||||| ||||| Sbjct 1024 AACAAAATTGAATTCACATATGAAGAAACTATTGCATT-GAAAAGGCAAGAAGAACTTAT 1082 Query 538 TCAGGAAGAAGAAAAAGAGAAGAACACTAAACTCaaaaaaaaaCTTGTTGGaaaaaaaGT 597 ||| ||||| ||| |||||||||||||||||||||||||| | ||||||| |||||||| Sbjct 1083 TCATGAAGAGGAAGCAGAGAAGAACACTAAACTCAAAAAAACATTTGTTGGTAAAAAAGT 1142 Query 598 GAAGTAA 604 ||| ||| Sbjct 1143 GAACTAA 1149 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30090254053 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5