BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946683

Length=655
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G35920.1 | Symbols:  | RNA helicase family protein | chr2:15...   213    2e-54


> AT2G35920.1 | Symbols:  | RNA helicase family protein | chr2:15075597-15080812 
FORWARD LENGTH=3371
Length=3371

 Score =  213 bits (115),  Expect = 2e-54
 Identities = 129/136 (95%), Gaps = 0/136 (0%)
 Strand=Plus/Plus

Query  327   AGTTACCAGAAATCATACGGACTCCATTGCAAAAGCTATGCCTGCATATTAAAAGTTTGC  386
             |||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||
Sbjct  2005  AGTTACCAGAAATCATACGGACTCCATTACAAGAGCTATGCCTGCATATCAAAAGTTTGC  2064

Query  387   AAGTTGGATCCATATGCTCATGCTTGGCAAAGGCACTGCAGCCACTAGATGCACTTGCTG  446
             |||||||||| ||| |||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct  2065  AAGTTGGATCTATAGGCTCATTCTTGGCAAAGGCACTGCAGCCACCAGATGCACTTGCTG  2124

Query  447   TTGAGAATGCTATTGA  462
             ||||||||||||||||
Sbjct  2125  TTGAGAATGCTATTGA  2140



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31647512610


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5