BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946684
Length=449
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15990.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 316 9e-86
AT4G16000.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 128 4e-29
> AT4G15990.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G16024.1);
Has 14 Blast hits to 14 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:9061269-9061676
REVERSE LENGTH=408
Length=408
Score = 316 bits (171), Expect = 9e-86
Identities = 340/419 (81%), Gaps = 22/419 (5%)
Strand=Plus/Plus
Query 21 ATGGCTCAAAATGATAGGAATACAAAAATCGCACAAAAGGCTTTTGAAATAGTCGATAAT 80
||||||||||| ||||||||||||| || || ||||||||||||||||| ||||||||
Sbjct 1 ATGGCTCAAAAGGATAGGAATACAAGGATAGCTCAAAAGGCTTTTGAAATGGTCGATAAG 60
Query 81 GTGTATGGTAAGTCCCACAAA-ATTACCCCTAACCCATATGTTCCTAGAA-ACGAGCT-T 137
|||||||||||||||| |||| | ||| |||| ||||||| ||||| || ||||| |
Sbjct 61 GTGTATGGTAAGTCCC-CAAACCTAACCACTAAACCATATGATCCTA-AAGACGAG-TCC 117
Query 138 CCTTCTTATTTTAACCAAAATTCCTACGAATATGGTGGTCC-AAAATCTTATATTGTAAA 196
|||||| |||| ||||| | | ||| ||||||||||||| |||||| |||| ||||
Sbjct 118 CCTTCTCGCTTTACCCAAAGTGCTTACAAATATGGTGGTCCAAAAATC-TATACCGTAAG 176
Query 197 AGAGGCAACTAGTAC-TATTACTGCTCGTCGAGTC-ATTTATCAGTCTTCTTA--TGAGT 252
|||||| |||||||| || || | | |||||| | |||||| | | | | | |||||
Sbjct 177 AGAGGCGACTAGTACTTA-TAGTTATGGTCGAG-CTATTTAT-A-TGTACGCACCTGAGT 232
Query 253 CAACTATAGAAA-AGCCAATTTTTTATCATCCCACGGCTCGTACTCAATACT-TCAGTGG 310
|||||||| ||| | || || ||| ||| ||||| | | || |||||||| | ||||
Sbjct 233 CAACTATA-AAAGAACCTGTTGTTTCTCACCCCACAGAACATATTCAATACTAT-GGTGG 290
Query 311 TGCCCGTCCTTTTATTGGCC-ATGTTGACCGGTTTGAGAGGCCGAAAGAACGGGCTATTA 369
| ||||||||||| || ||| || || |||||||||||||||||| ||||| |||||
Sbjct 291 TACCCGTCCTTTTGTT-GCCAATCCCAACAGGTTTGAGAGGCCGAAAGGACGGGTTATTA 349
Query 370 GCTGCGATGAGGCGGTCCAGCGCTATGGAGGGGTGCTTATAAAGGAATTTCGTAAATAA 428
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 350 ACTGCGATGAGGCGGTCCAACTCTATGGAGGGGTGCTTATAAAGGAATTTCGTAAATAA 408
> AT4G16000.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G15990.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr4:9063845-9064481 REVERSE LENGTH=637
Length=637
Score = 128 bits (69), Expect = 4e-29
Identities = 108/127 (85%), Gaps = 2/127 (2%)
Strand=Plus/Plus
Query 307 GTGGTGCCCGTCCTTTTATTGGCCATGTTGACCGGTTTGAGAGGCCGAAAGAACGGGCTA 366
|||||||||| |||||| | || || ||| |||||||||| |||||| |||| |||
Sbjct 198 GTGGTGCCCGGCCTTTTGTAGGTAATCCCAACCCGTTTGAGAGGTCGAAAGGACGGCCTA 257
Query 367 TTAGCTGCGATGAGGCGGTCCAG-CGCTATGGAGGGGTGCTTATAAAGGAATTTCGTAAA 425
||| |||||| |||||||| ||| | ||||||||| ||||||||||||||||||||||||
Sbjct 258 TTACCTGCGACGAGGCGGT-CAGACTCTATGGAGGAGTGCTTATAAAGGAATTTCGTAAA 316
Query 426 TAAGCGG 432
|||||||
Sbjct 317 TAAGCGG 323
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21363793325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5